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GWAS Report for Sclero 1
Experimental Details
Number of germplasm analyzed | 130 |
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Number of loci tested | 7864 |
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Platform name | GBS |
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Platform details | Genotyping-by-sequencing with three ApeKI libraries |
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Publication for This Experiment
Genome Wide Association Mapping of Sclerotinia sclerotiorum Resistance in Soybean with a Genotyping-by-Sequencing Approach
(Bastien et al. 2013a)
The Plant Genome 7(1):1-13
10.3835/plantgenome2013.10.0030
Controlled vocabulary terms associated with the QTL Family
GWAS QTL
The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.
GWAS QTL name | Associated locus | Chromosome | Linkage Group |
Sclero 1-g1.1 | ScleroSNP0077 | Gm01 | D1a |
Sclero 1-g1.2 | ScleroSNP0078 | Gm01 | D1a |
Sclero 1-g1.3 | ScleroSNP0079 | Gm01 | D1a |
Sclero 1-g1.4 | ScleroSNP0080 | Gm01 | D1a |
Sclero 1-g1.5 | ScleroSNP0081 | Gm01 | D1a |
Sclero 1-g2.1 | ScleroSNP5308 | Gm15 | E |
Sclero 1-g2.2 | ScleroSNP5309 | Gm15 | E |
Sclero 1-g2.3 | ScleroSNP5314 | Gm15 | E |
Sclero 1-g3 | ScleroSNP7498 | Gm19 | L |
Sclero 1-g4 | ScleroSNP7711 | Gm20 | I |
Click Here to View Full List of GWAS QTL