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GWAS Report for Sclero5

Experimental Details

Number of germplasm analyzed	101
Number of loci tested	8397
Platform name	GBS
Platform details	IGST-GBS

Publication for This Experiment

Association mapping of QTLs for sclerotinia stem rot resistance in a collection of soybean plant introductions using a genotyping by sequencing (GBS) approach
(Iquira et al. 2015)

BMC Plant Biology 2015 15(5)
https://doi.org/10.1186/s12870-014-0408-y

Supplemental data for the GWAS QTL
Significant SNPs, All SNPs, Germplasm names

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001479
TO	TO:0000439

Other traits reported in this paper

Comments

SNPs and InDels were identified using the IGST-GBS variant pipeline

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	R2	p-value	Chromosome	Linkage Group
Sclero5-g1	Gm03_44735630	Gm03_44735630	21	2.03E-06	Gm3

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Click Here to View Full List of GWAS QTL