Click Here to View Full List of GWAS QTL
GWAS Report for Seed weight 5
Experimental Details
Number of germplasm analyzed | 309 |
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Number of loci tested | 31045 |
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Platform name | SoySNP50k |
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Platform details | Illumina BeadChip |
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Publication for This Experiment
Genome-wide association study, genomic prediction and marker-assisted selection for seed weight in soybean (Glycine max)
(Zhang et al. 2016a)
Theor. Appl. Genet. 2016, 129(1):117-130
10.1007/s00122-015-2614-x
Controlled vocabulary terms associated with the QTL Family
GWAS QTL
The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.
GWAS QTL name | Original name | Associated locus | R2 | p-value | Candidate gene | Chromosome | Linkage Group |
Seed weight 5-g1 | SW1 | ss715587065 | 0.018 | 7.27E-05 | | Gm04 | C1 |
Seed weight 5-g2 | SW2 | ss715587148 | 0.026 | 3.11E-06 | | Gm04 | C1 |
Seed weight 5-g3 | SW3 | ss715588375 | 0.021 | 2.35E-05 | | Gm04 | C1 |
Seed weight 5-g4 | SW4 | ss715588874 | 0.022 | 1.28E-05 | | Gm04 | C1 |
Seed weight 5-g5 | SW5 | ss715593001 | 0.018 | 6.71E-05 | | Gm06 | C2 |
Seed weight 5-g6 | SW6 | ss715593330 | 0.027 | 1.76E-06 | | Gm06 | C2 |
Seed weight 5-g7 | SW7 | ss715593334 | 0.025 | 3.34E-06 | | Gm06 | C2 |
Seed weight 5-g8 | SW8 | ss715596454 | 0.019 | 5.71E-05 | | Gm07 | M |
Seed weight 5-g9 | SW9 | ss715599452 | 0.018 | 7.26E-05 | | Gm08 | A2 |
Seed weight 5-g10 | SW10 | ss715604305 | 0.019 | 4.98E-05 | | Gm09 | K |
Seed weight 5-g11 | SW11 | ss715606515 | 0.038 | 1.84E-08 | Glyma10g28250 | Gm10 | O |
Seed weight 5-g12 | SW12 | ss715613104 | 0.022 | 1.27E-05 | | Gm12 | H |
Seed weight 5-g13 | SW13 | ss715619663 | 0.029 | 7.35E-07 | | Gm14 | B2 |
Seed weight 5-g14 | SW14 | ss715619731 | 0.031 | 2.58E-07 | Glyma14g08050 | Gm14 | B2 |
Seed weight 5-g15 | SW15 | ss715619755 | 0.029 | 7.16E-07 | Glyma14g08280 | Gm14 | B2 |
Seed weight 5-g16 | SW16 | ss715620581 | 0.02 | 3.75E-05 | | Gm15 | E |
Seed weight 5-g17 | SW17 | ss715632152 | 0.019 | 6.18E-05 | | Gm18 | G |
Seed weight 5-g18 | SW18 | ss715632439 | 0.023 | 1.11E-05 | | Gm18 | G |
Seed weight 5-g19 | SW19 | ss715635092 | 0.023 | 7.88E-06 | Glyma19g33421 | Gm19 | L |
Seed weight 5-g20 | SW20 | ss715635104 | 0.025 | 2.89E-05 | Glyma19g33550 | Gm19 | L |
Seed weight 5-g21 | SW21 | ss715635262 | 0.026 | 2.11E-06 | Glyma19g35180 | Gm19 | L |
Seed weight 5-g22 | SW22 | ss715638957 | 0.026 | 3.06E-06 | | Gm20 | I |
Click Here to View Full List of GWAS QTL