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GWAS Report for Seed weight 7
Experimental Details
Number of germplasm analyzed | 166 |
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Number of loci tested | 35,009 |
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Platform name | SoySNP50K |
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Platform details | Illumina BeadChip |
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Publication for This Experiment
Identification of QTL with large effect on seed weight in a selective population of soybean with genome-wide association and fixation index analyses
(Yan et al. 2017a)
BMC Genomics 2017, 18:529
10.1186/s12864-017-3922-0
Controlled vocabulary terms associated with the QTL Family
GWAS QTL
The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.
GWAS QTL name | Associated locus | R2 | p-value | Chromosome | Linkage Group |
Seed weight 7-g1 | ss715587337 | 0.075 | 0.000776247 | Gm04 | C1 |
Seed weight 7-g2 | ss715587354 | 0.073 | 0.000812831 | Gm04 | C1 |
Seed weight 7-g3 | ss715587463 | 0.073 | 0.000776247 | Gm04 | C1 |
Seed weight 7-g4 | ss715587560 | 0.111 | 3.02E-05 | Gm04 | C1 |
Seed weight 7-g5 | ss715587852 | 0.128 | 6.76E-06 | Gm04 | C1 |
Seed weight 7-g6 | ss715626515 | 0.092 | 0.000123027 | Gm17 | D2 |
Seed weight 7-g7 | ss715626516 | 0.106 | 2.82E-05 | Gm17 | D2 |
Seed weight 7-g8 | ss715628293 | 0.132 | 3.89E-06 | Gm17 | D2 |
Click Here to View Full List of GWAS QTL