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Report for Sequence Feature Glyma.04g027000

Feature Type:gene_model
Chromosome:Gm04
Start:2193861
stop:2195469
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g027000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G75540.1AT salt tolerance homolog2 JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0009640GO-bp photomorphogenesis EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0000989GO-mf transcription factor activity, transcription factor binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
PF00643PFAM B-box zinc finger JGI N/AIEA

Expression Patterns of Glyma.04g027000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g027000
ParalogEvidenceComments
Glyma.06g027000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g027000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g02960 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g027000
>Glyma.04g027000.2 sequence-type=transcript locus=Glyma.04g027000 ID=Glyma.04g027000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TAGTTGTGTGTCTAAATTAAATTAAAAAATGAGAATAAGAAGGTATTGTATTTGGGTCAATAGAGCACCCCCCACTTGATATTTAATCTTTTTGTAAGAACGTGAAACATGACACCCTAACTCGCGTTGCTTGCTTGAGTGATTTGACTCGTGTCGAGTGTATTGTATTTAGTTTAAGCGTGGCTGATCGAGTGAGTATCAGAATCAATTCAATTTTGAGCTAGTCATGAAGATCCACTGCGACGTGTGTAACAAGCACCAGGCCTCTTTCTTCTGCACCGCCGACGAAGCTGCCCTATGCGACGGCTGCGACCACCGCGTCCACCACGCCAACAAGCTCGCCTCCAAACACCAACGCTTCTCCCTCACCCACCCCTCTGCGAAACATTTTCCCCTCTGCGATGTTTGCCAGGAGAGAAGAGCCTTCGTGTTTTGTCAGCAAGATAGAGCGATTCTGTGCAAAGAGTGTGACGTGCCCATTCATTCTGCCAACGACCTCACCAAGAACCATAGCAGGTTTCTTCTCACTGGGATTAAGTTCTCTGCTTCTGCCACGCCTTATGATTATTCATcaccaccaccaccaccaccaccaccaccaccCAAGAGAAACCCTGTTCTCGATTCTCCTTCAACACCGTCACCGCCTAAGCCTGGGGGAAACTCGCTAACAAACGAAGAAGAACCTGGTTTCACAGGTAGCAGCATTTCAGAGTACTTGATAAACTCTATCCCAGGCATGAAGTTCGAAGATTTCCTCGATTCACATTCTCTTCCCTTTGCTTGCTCCAAGCAATTGATCATAGTTTAATTGGATCTGAGAATTGAGATTAATACGTTGACGATGAATTACAGAATAGTGATGACATGTTGTCGCTGTTTGGTGAGGGAAACATGGTTTCTTTCTCACCCGGTGGGTTCTGGGTTCCTCAAGCACCACCATCTTCAGTACAAATGGATCGGCAGAGTGGGTACAGAGAGACAAGGGAAGGTAGCATTAGATCAAGTTTTGGAGATGATAATTTCATAGTTCCACAGATGAGTCCTCCCAGCAATGTGTCTAATAAGAGATCCAGGCTTCTCTGGTAAAACAGATATAGCTAGTTACAACTAGCTAACCACCTTATGTGGCTTTGTGTGACTTAAATTTCACTCTCCCCTCTtattttgtattttttatgtggtattgttttaatttttgtttgttcgtttgtttttgGTCCCTCTCCCTTCCTGAACTACACTACTCTTCTAGCTACTTTCTCTCTTGATAAGTTGGTGTATCTCTTCCAAATTGTAAATATGAACGTTTTAAGAGCTCTCTGGGTTGAGATTTTTTGTGTTTTTGC
Coding sequences of Glyma.04g027000
>Glyma.04g027000.1 sequence-type=CDS polypeptide=Glyma.04g027000.1.p locus=Glyma.04g027000 ID=Glyma.04g027000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGATCCACTGCGACGTGTGTAACAAGCACCAGGCCTCTTTCTTCTGCACCGCCGACGAAGCTGCCCTATGCGACGGCTGCGACCACCGCGTCCACCACGCCAACAAGCTCGCCTCCAAACACCAACGCTTCTCCCTCACCCACCCCTCTGCGAAACATTTTCCCCTCTGCGATGTTTGCCAGGAGAGAAGAGCCTTCGTGTTTTGTCAGCAAGATAGAGCGATTCTGTGCAAAGAGTGTGACGTGCCCATTCATTCTGCCAACGACCTCACCAAGAACCATAGCAGGTTTCTTCTCACTGGGATTAAGTTCTCTGCTTCTGCCACGCCTTATGATTATTCATCACCACCACCACCACCACCACCACCACCACCCAAGAGAAACCCTGTTCTCGATTCTCCTTCAACACCGTCACCGCCTAAGCCTGGGGGAAACTCGCTAACAAACGAAGAAGAACCTGGTTTCACAGGTAGCAGCATTTCAGAGTACTTGATAAACTCTATCCCAGGCATGAAGTTCGAAGATTTCCTCGATTCACATTCTCTTCCCTTTGCTTGCTCCAAGAATAGTGATGACATGTTGTCGCTGTTTGGTGAGGGAAACATGGTTTCTTTCTCACCCGGTGGGTTCTGGGTTCCTCAAGCACCACCATCTTCAGTACAAATGGATCGGCAGAGTGGGTACAGAGAGACAAGGGAAGGTAGCATTAGATCAAGTTTTGGAGATGATAATTTCATAGTTCCACAGATGAGTCCTCCCAGCAATGTGTCTAATAAGAGATCCAGGCTTCTCTGGTAA

>Glyma.04g027000.2 sequence-type=CDS polypeptide=Glyma.04g027000.2.p locus=Glyma.04g027000 ID=Glyma.04g027000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGATCCACTGCGACGTGTGTAACAAGCACCAGGCCTCTTTCTTCTGCACCGCCGACGAAGCTGCCCTATGCGACGGCTGCGACCACCGCGTCCACCACGCCAACAAGCTCGCCTCCAAACACCAACGCTTCTCCCTCACCCACCCCTCTGCGAAACATTTTCCCCTCTGCGATGTTTGCCAGGAGAGAAGAGCCTTCGTGTTTTGTCAGCAAGATAGAGCGATTCTGTGCAAAGAGTGTGACGTGCCCATTCATTCTGCCAACGACCTCACCAAGAACCATAGCAGGTTTCTTCTCACTGGGATTAAGTTCTCTGCTTCTGCCACGCCTTATGATTATTCATCACCACCACCACCACCACCACCACCACCACCCAAGAGAAACCCTGTTCTCGATTCTCCTTCAACACCGTCACCGCCTAAGCCTGGGGGAAACTCGCTAACAAACGAAGAAGAACCTGGTTTCACAGGTAGCAGCATTTCAGAGTACTTGATAAACTCTATCCCAGGCATGAAGTTCGAAGATTTCCTCGATTCACATTCTCTTCCCTTTGCTTGCTCCAAGCAATTGATCATAGTTTAA
Predicted protein sequences of Glyma.04g027000
>Glyma.04g027000.1.p sequence-type=predicted peptide transcript=Glyma.04g027000.1 locus=Glyma.04g027000 ID=Glyma.04g027000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKIHCDVCNKHQASFFCTADEAALCDGCDHRVHHANKLASKHQRFSLTHPSAKHFPLCDVCQERRAFVFCQQDRAILCKECDVPIHSANDLTKNHSRFLLTGIKFSASATPYDYSSPPPPPPPPPPKRNPVLDSPSTPSPPKPGGNSLTNEEEPGFTGSSISEYLINSIPGMKFEDFLDSHSLPFACSKNSDDMLSLFGEGNMVSFSPGGFWVPQAPPSSVQMDRQSGYRETREGSIRSSFGDDNFIVPQMSPPSNVSNKRSRLLW*

>Glyma.04g027000.2.p sequence-type=predicted peptide transcript=Glyma.04g027000.2 locus=Glyma.04g027000 ID=Glyma.04g027000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKIHCDVCNKHQASFFCTADEAALCDGCDHRVHHANKLASKHQRFSLTHPSAKHFPLCDVCQERRAFVFCQQDRAILCKECDVPIHSANDLTKNHSRFLLTGIKFSASATPYDYSSPPPPPPPPPPKRNPVLDSPSTPSPPKPGGNSLTNEEEPGFTGSSISEYLINSIPGMKFEDFLDSHSLPFACSKQLIIV*






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