SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.07g138900

Feature Type:gene_model
Chromosome:Gm07
Start:16465077
stop:16469598
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g138900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G52240.2AT RHO guanyl-nucleotide exchange factor 11 JGI N/AIEA
GO:0007017GO-bp microtubule-based process EnsemblGenomesN/AIEA
GO:0007017GO-bp microtubule-based process JGI N/AIEA
GO:0010970GO-bp transport along microtubule EnsemblGenomesN/AIEA
GO:0060271GO-bp cilium assembly EnsemblGenomesN/AIEA
GO:2000582GO-bp positive regulation of ATP-dependent microtubule motor activity, plus-end-directed EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005856GO-cc cytoskeleton EnsemblGenomesN/AIEA
GO:0005868GO-cc cytoplasmic dynein complex EnsemblGenomesN/AIEA
GO:0005874GO-cc microtubule EnsemblGenomesN/AIEA
GO:0005875GO-cc microtubule associated complex JGI N/AIEA
GO:0030286GO-cc dynein complex EnsemblGenomesN/AIEA
GO:0003774GO-mf motor activity EnsemblGenomesN/AIEA
GO:0008092GO-mf cytoskeletal protein binding EnsemblGenomesN/AIEA
GO:0008574GO-mf ATP-dependent microtubule motor activity, plus-end-directed EnsemblGenomesN/AIEA
GO:0045505GO-mf dynein intermediate chain binding EnsemblGenomesN/AIEA
GO:0051959GO-mf dynein light intermediate chain binding EnsemblGenomesN/AIEA
KOG3430 KOG Dynein light chain type 1 JGI N/AIEA
PTHR11886Panther DYNEIN LIGHT CHAIN JGI N/AIEA
PTHR11886:SF22Panther DYNEIN LIGHT CHAIN TYPE 1-LIKE PROTEIN JGI N/AIEA
PF01221PFAM Dynein light chain type 1 JGI N/AIEA
GN7V-65391SoyCyc9-rxn dynein ATPase Plant Metabolic Network ISS

Expression Patterns of Glyma.07g138900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.07g138900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g16690 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.07g138900
>Glyma.07g138900.1 sequence-type=CDS polypeptide=Glyma.07g138900.1.p locus=Glyma.07g138900 ID=Glyma.07g138900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGGAAGGAAAAGCTGTGGTGAGAGAGACAGACATGCCAGAGGGAATGCAGAGCTATGTTATGGAATTAGCACACCAAGCTCTCGATGCACATGAAGTTTCTGATTGTCAGTCCATTGCTCATTTCATCAAACAGAAACTTGATGAAGCATATGGACCTGCTTGGAATTCCGTGGTTGGAAAAGACTTTGGATCTTGCATCACACATTTATGTGGAAGTTTCATATTCTTTCGTGTGGAGATGATGGAATTTCTGATCTTCAAAGATGGGAAGAATTTCACAGAAAGCAGGGAAGAAGCTATTGGAGTGCTGCAGAAGGCTAGAAATTGTGATTAG
Predicted protein sequences of Glyma.07g138900
>Glyma.07g138900.1.p sequence-type=predicted peptide transcript=Glyma.07g138900.1 locus=Glyma.07g138900 ID=Glyma.07g138900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLEGKAVVRETDMPEGMQSYVMELAHQALDAHEVSDCQSIAHFIKQKLDEAYGPAWNSVVGKDFGSCITHLCGSFIFFRVEMMEFLIFKDGKNFTESREEAIGVLQKARNCD*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo