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Report for Sequence Feature Glyma.07g171000

Feature Type:gene_model
Chromosome:Gm07
Start:29553840
stop:29578818
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g171000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G14830.1AT DYNAMIN-like 1C JGI N/AIEA
GO:0000266GO-bp mitochondrial fission EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003924GO-mf GTPase activity EnsemblGenomesN/AIEA
GO:0003924GO-mf GTPase activity JGI N/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
GO:0008017GO-mf microtubule binding EnsemblGenomesN/AIEA
KOG0446 KOG Vacuolar sorting protein VPS1, dynamin, and related proteins JGI N/AIEA
PTHR11566Panther DYNAMIN JGI N/AIEA
PTHR11566:SF12Panther DYNAMIN-LIKE 120 KDA PROTEIN, MITOCHONDRIAL JGI N/AIEA
PF00350PFAM Dynamin family JGI N/AIEA
PF01031PFAM Dynamin central region JGI N/AIEA
PF02212PFAM Dynamin GTPase effector domain JGI N/AIEA
GN7V-68189SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.07g171000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07g171000 not represented in the dataset
Glyma.07g171000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g171000
ParalogEvidenceComments
Glyma.02g085700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g171000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g26831 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.07g171000
>Glyma.07g171000.2 sequence-type=transcript locus=Glyma.07g171000 ID=Glyma.07g171000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTGATGTTTGAGCTCATCCAGAAAAAGACTTTAGTAAATTTTTTTTCTTTAGTAAGTTGAAGATCAAGAGATTTTGATGCACATTTATTTGCTCTTGCGATTGGAAGGTATTGTGACACGGAGGCCACTAGTTCTGCAACTTCACAAGACAGATGATGGGCAGCAGGAATATGCTGAGTTTCTTCATGCATCAAGAAAGAGATTCACTGACTTTGCTGCTGTGAGACAGGAAATTTCAGATGAAACAGATCGTATAACTGGGAAGACAAAGGCAATTTCAAACGTTCCAATTCAACTGAGCATATATTCTCCAAATGTTGTGAACTTAACCCTCATAGACCTTCCTGGGTTGACAAAGGTTGCTGTAGAGGGACAATCAGACACCATTGTTCAAGATATTGAGAACATGGTCCGTTCCTATGTTGAGAAGCCCAATTGCATTATATTGGCCATCTCTCCTGCAAACCAAGATATTGCCACTTCAGATGCAATAAAAATTGCAAGAGAAGTTGATCCTTCTGGTGAAAGGACATTTGGGGTGGTTACAAAACTTGATCTTATGGATAAAGGAACTAATGCTGTTGAGGTTCTCGAAGGAAGGCAATACAGGTTGAAACATCCTTGGGTTGGAATTGTCAATCGTTCACAAGCTGATATTAATAAAAACGTTGACATGATTGTCGCTCGCAAGAAGGAACGCGAATATTTTGAGACTAGTCCTGAATATGGACATTTGGCACATAAAATGGGGGCAGAATATCTTGCCAAACTTCTATCAGAGCATTTGGAGTATGTTATTAGGATGAAGATACCTAGTATCATTTCCTTAATAAATAAAGCAATTGATGAGCTTAATGCAGAGTTGGACCGAATTGGCAGGCCAATAGCTGTGGATTCAGGGGCCAAATTATACACAATTTTACAGATGTGTCGAGCATTTGACAAAGTATTTAAAGAACACCTGGATGGAGGACGTCCTGGCGGGGATAGAATATATGGTGTTTTTGACCACCAATTACCAGCTGCTTTAAAAAAGCTCCCATTTAATCGCCATCTTTCCTTAAAGAATGTCGAAAAAGTTGTTATGGAAGCGGATGGTTATCAGCCACATCTAATTGCTCCAGAGCAAGGATATAGAAGACTTATTGAGGGATCTATTGGCTATTTCAAAGGCCCAGCTGAAGCCTCTGTGGATGCTGTACATCTCATTTTAAAGGAGCTTGTACGGAAGTCAATTGCAGCAACTGAGGAATTGAAGAGGTTTCCAACCCTTCAGGCTGATATAGCTGCTGCTGCAAATGATGCTTTAGAACGATTCCGAGAAGAAAGTAGGAGGACTGTGACCCGGATGGTTGATATGGAGTCTGGCTATCTAACAGTGGAATTTTTTCGGAAGATGCATCTTGAACCGGAAAAGAACGCAGATCAAAAGAACCCCAATCGGAGTAATCCTAATCCACCTGTAGACAGTTACACAGATAATCACCTCAGTAAAATTGGATCAAATGTTAATGGTTATATCAACATGGTTTTGGATACACTCAAAAATTCAATACCAAAAGCCGTGGTTCATTGTCAAGTTAGAGAGGCAAAGAGATCATTGCTTAACCATTTTTATGTTCAAGTTGGGAAGAGAGAGAAGGATCAATTGGGGGCTTTGTTGGATGAAGACCCTGCACTTATGGAAAAGAGAGCACAACTAGCTAAAAGGCTTGAATTGTACAAGCAAGCTATGGATGATATTAACTCTGTGGCTTGGAATAAATAATGAATATATATCCCATTCATTACAACGGATGCTATAGGTTCAATTTTGCGCATCTGCTATAACGAAGATCAATCAAAGATTAATTATTTCACACTTTGATTCTATTTTATTTTTTTATCAAACTGGAAAGCAAAAGGCATAGTTGCTGCAATAAGTTCTAATTCTTTTACCAGTAGTGTATAAATATTGGACTTTATGTTTTGCGTCTAATATAACTGTGGCGTCTTAT
Coding sequences of Glyma.07g171000
>Glyma.07g171000.1 sequence-type=CDS polypeptide=Glyma.07g171000.1.p locus=Glyma.07g171000 ID=Glyma.07g171000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGACCATGACGAGCTTGATCGGACTCATCAACAAGATCCAACGTGCGTGCACGGTGTTGGGTGACCATGGCGGCGAGGGAATGTCGCTGTGGGAGGCGCTTCCCACGGTCGCGGTGGTCGGAGGACAGAGTTCAGGGAAATCATCAGTGTTGGAAAGTGTCGTGGGAAGGGATTTTCTGCCTCGGGGATCTGGTATTGTGACACGGAGGCCACTAGTTCTGCAACTTCACAAGACAGATGATGGGCAGCAGGAATATGCTGAGTTTCTTCATGCATCAAGAAAGAGATTCACTGACTTTGCTGCTGTGAGACAGGAAATTTCAGATGAAACAGATCGTATAACTGGGAAGACAAAGGCAATTTCAAACGTTCCAATTCAACTGAGCATATATTCTCCAAATGTTGTGAACTTAACCCTCATAGACCTTCCTGGGTTGACAAAGGTTGCTGTAGAGGGACAATCAGACACCATTGTTCAAGATATTGAGAACATGGTCCGTTCCTATGTTGAGAAGCCCAATTGCATTATATTGGCCATCTCTCCTGCAAACCAAGATATTGCCACTTCAGATGCAATAAAAATTGCAAGAGAAGTTGATCCTTCTGGTGAAAGGACATTTGGGGTGGTTACAAAACTTGATCTTATGGATAAAGGAACTAATGCTGTTGAGGTTCTCGAAGGAAGGCAATACAGGTTGAAACATCCTTGGGTTGGAATTGTCAATCGTTCACAAGCTGATATTAATAAAAACGTTGACATGATTGTCGCTCGCAAGAAGGAACGCGAATATTTTGAGACTAGTCCTGAATATGGACATTTGGCACATAAAATGGGGGCAGAATATCTTGCCAAACTTCTATCAGAGCATTTGGAGTATGTTATTAGGATGAAGATACCTAGTATCATTTCCTTAATAAATAAAGCAATTGATGAGCTTAATGCAGAGTTGGACCGAATTGGCAGGCCAATAGCTGTGGATTCAGGGGCCAAATTATACACAATTTTACAGATGTGTCGAGCATTTGACAAAGTATTTAAAGAACACCTGGATGGAGGACGTCCTGGCGGGGATAGAATATATGGTGTTTTTGACCACCAATTACCAGCTGCTTTAAAAAAGCTCCCATTTAATCGCCATCTTTCCTTAAAGAATGTCGAAAAAGTTGTTATGGAAGCGGATGGTTATCAGCCACATCTAATTGCTCCAGAGCAAGGATATAGAAGACTTATTGAGGGATCTATTGGCTATTTCAAAGGCCCAGCTGAAGCCTCTGTGGATGCTGTACATCTCATTTTAAAGGAGCTTGTACGGAAGTCAATTGCAGCAACTGAGGAATTGAAGAGGTTTCCAACCCTTCAGGCTGATATAGCTGCTGCTGCAAATGATGCTTTAGAACGATTCCGAGAAGAAAGTAGGAGGACTGTGACCCGGATGGTTGATATGGAGTCTGGCTATCTAACAGTGGAATTTTTTCGGAAGATGCATCTTGAACCGGAAAAGAACGCAGATCAAAAGAACCCCAATCGGAGTAATCCTAATCCACCTGTAGACAGTTACACAGATAATCACCTCAGTAAAATTGGATCAAATGTTAATGGTTATATCAACATGGTTTTGGATACACTCAAAAATTCAATACCAAAAGCCGTGGTTCATTGTCAAGTTAGAGAGGCAAAGAGATCATTGCTTAACCATTTTTATGTTCAAGTTGGGAAGAGAGAGAAGGATCAATTGGGGGCTTTGTTGGATGAAGACCCTGCACTTATGGAAAAGAGAGCACAACTAGCTAAAAGGCTTGAATTGTACAAGCAAGCTATGGATGATATTAACTCTGTGGCTTGGAATAAATAA

>Glyma.07g171000.2 sequence-type=CDS polypeptide=Glyma.07g171000.2.p locus=Glyma.07g171000 ID=Glyma.07g171000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCACATTTATTTGCTCTTGCGATTGGAAGGTATTGTGACACGGAGGCCACTAGTTCTGCAACTTCACAAGACAGATGATGGGCAGCAGGAATATGCTGAGTTTCTTCATGCATCAAGAAAGAGATTCACTGACTTTGCTGCTGTGAGACAGGAAATTTCAGATGAAACAGATCGTATAACTGGGAAGACAAAGGCAATTTCAAACGTTCCAATTCAACTGAGCATATATTCTCCAAATGTTGTGAACTTAACCCTCATAGACCTTCCTGGGTTGACAAAGGTTGCTGTAGAGGGACAATCAGACACCATTGTTCAAGATATTGAGAACATGGTCCGTTCCTATGTTGAGAAGCCCAATTGCATTATATTGGCCATCTCTCCTGCAAACCAAGATATTGCCACTTCAGATGCAATAAAAATTGCAAGAGAAGTTGATCCTTCTGGTGAAAGGACATTTGGGGTGGTTACAAAACTTGATCTTATGGATAAAGGAACTAATGCTGTTGAGGTTCTCGAAGGAAGGCAATACAGGTTGAAACATCCTTGGGTTGGAATTGTCAATCGTTCACAAGCTGATATTAATAAAAACGTTGACATGATTGTCGCTCGCAAGAAGGAACGCGAATATTTTGAGACTAGTCCTGAATATGGACATTTGGCACATAAAATGGGGGCAGAATATCTTGCCAAACTTCTATCAGAGCATTTGGAGTATGTTATTAGGATGAAGATACCTAGTATCATTTCCTTAATAAATAAAGCAATTGATGAGCTTAATGCAGAGTTGGACCGAATTGGCAGGCCAATAGCTGTGGATTCAGGGGCCAAATTATACACAATTTTACAGATGTGTCGAGCATTTGACAAAGTATTTAAAGAACACCTGGATGGAGGACGTCCTGGCGGGGATAGAATATATGGTGTTTTTGACCACCAATTACCAGCTGCTTTAAAAAAGCTCCCATTTAATCGCCATCTTTCCTTAAAGAATGTCGAAAAAGTTGTTATGGAAGCGGATGGTTATCAGCCACATCTAATTGCTCCAGAGCAAGGATATAGAAGACTTATTGAGGGATCTATTGGCTATTTCAAAGGCCCAGCTGAAGCCTCTGTGGATGCTGTACATCTCATTTTAAAGGAGCTTGTACGGAAGTCAATTGCAGCAACTGAGGAATTGAAGAGGTTTCCAACCCTTCAGGCTGATATAGCTGCTGCTGCAAATGATGCTTTAGAACGATTCCGAGAAGAAAGTAGGAGGACTGTGACCCGGATGGTTGATATGGAGTCTGGCTATCTAACAGTGGAATTTTTTCGGAAGATGCATCTTGAACCGGAAAAGAACGCAGATCAAAAGAACCCCAATCGGAGTAATCCTAATCCACCTGTAGACAGTTACACAGATAATCACCTCAGTAAAATTGGATCAAATGTTAATGGTTATATCAACATGGTTTTGGATACACTCAAAAATTCAATACCAAAAGCCGTGGTTCATTGTCAAGTTAGAGAGGCAAAGAGATCATTGCTTAACCATTTTTATGTTCAAGTTGGGAAGAGAGAGAAGGATCAATTGGGGGCTTTGTTGGATGAAGACCCTGCACTTATGGAAAAGAGAGCACAACTAGCTAAAAGGCTTGAATTGTACAAGCAAGCTATGGATGATATTAACTCTGTGGCTTGGAATAAATAA
Predicted protein sequences of Glyma.07g171000
>Glyma.07g171000.1.p sequence-type=predicted peptide transcript=Glyma.07g171000.1 locus=Glyma.07g171000 ID=Glyma.07g171000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATMTSLIGLINKIQRACTVLGDHGGEGMSLWEALPTVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTDDGQQEYAEFLHASRKRFTDFAAVRQEISDETDRITGKTKAISNVPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQSDTIVQDIENMVRSYVEKPNCIILAISPANQDIATSDAIKIAREVDPSGERTFGVVTKLDLMDKGTNAVEVLEGRQYRLKHPWVGIVNRSQADINKNVDMIVARKKEREYFETSPEYGHLAHKMGAEYLAKLLSEHLEYVIRMKIPSIISLINKAIDELNAELDRIGRPIAVDSGAKLYTILQMCRAFDKVFKEHLDGGRPGGDRIYGVFDHQLPAALKKLPFNRHLSLKNVEKVVMEADGYQPHLIAPEQGYRRLIEGSIGYFKGPAEASVDAVHLILKELVRKSIAATEELKRFPTLQADIAAAANDALERFREESRRTVTRMVDMESGYLTVEFFRKMHLEPEKNADQKNPNRSNPNPPVDSYTDNHLSKIGSNVNGYINMVLDTLKNSIPKAVVHCQVREAKRSLLNHFYVQVGKREKDQLGALLDEDPALMEKRAQLAKRLELYKQAMDDINSVAWNK*

>Glyma.07g171000.2.p sequence-type=predicted peptide transcript=Glyma.07g171000.2 locus=Glyma.07g171000 ID=Glyma.07g171000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHIYLLLRLEGIVTRRPLVLQLHKTDDGQQEYAEFLHASRKRFTDFAAVRQEISDETDRITGKTKAISNVPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQSDTIVQDIENMVRSYVEKPNCIILAISPANQDIATSDAIKIAREVDPSGERTFGVVTKLDLMDKGTNAVEVLEGRQYRLKHPWVGIVNRSQADINKNVDMIVARKKEREYFETSPEYGHLAHKMGAEYLAKLLSEHLEYVIRMKIPSIISLINKAIDELNAELDRIGRPIAVDSGAKLYTILQMCRAFDKVFKEHLDGGRPGGDRIYGVFDHQLPAALKKLPFNRHLSLKNVEKVVMEADGYQPHLIAPEQGYRRLIEGSIGYFKGPAEASVDAVHLILKELVRKSIAATEELKRFPTLQADIAAAANDALERFREESRRTVTRMVDMESGYLTVEFFRKMHLEPEKNADQKNPNRSNPNPPVDSYTDNHLSKIGSNVNGYINMVLDTLKNSIPKAVVHCQVREAKRSLLNHFYVQVGKREKDQLGALLDEDPALMEKRAQLAKRLELYKQAMDDINSVAWNK*






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