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Report for Sequence Feature Glyma.10g177100

Feature Type:gene_model
Chromosome:Gm10
Start:41051334
stop:41053699
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g177100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G44390.1AT FAD-binding Berberine family protein JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0008762GO-mf UDP-N-acetylmuramate dehydrogenase activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0016614GO-mf oxidoreductase activity, acting on CH-OH group of donors EnsemblGenomesN/AIEA
GO:0050660GO-mf flavin adenine dinucleotide binding EnsemblGenomesN/AIEA
GO:0050660GO-mf flavin adenine dinucleotide binding JGI N/AIEA
GO:0071949GO-mf FAD binding EnsemblGenomesN/AIEA
KOG1231 KOG Proteins containing the FAD binding domain JGI N/AIEA
PTHR11748Panther D-LACTATE DEHYDROGENASE JGI N/AIEA
PTHR11748:SF29Panther JGI N/AIEA
PF01565PFAM FAD binding domain JGI N/AIEA
PF08031PFAM Berberine and berberine like JGI N/AIEA
GN7V-44608SoyCyc9-rxn reticuline oxidase Plant Metabolic Network ISS

Expression Patterns of Glyma.10g177100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g177100
ParalogEvidenceComments
Glyma.20g213100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g177100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g32070 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g177100
>Glyma.10g177100.1 sequence-type=CDS polypeptide=Glyma.10g177100.1.p locus=Glyma.10g177100 ID=Glyma.10g177100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCTACTTCCTCAAAAGATTGTGCCTTTTATGTTTCCTCTTGCTATCCTTTGATGTTTCACTGTGTTCATGTGCTTCACTCAGAGACTTGGCTTCTTGCTTGGATAATCACGATATCAAAAACTTTACCACGCTCCCTTACAAAGAACATGATCATTCCTCTGCCTATAATTACTACAAAATTCTCAATTTTTCCATCCAAAACCTTCGGTTCGCAGAACCCGTGATTCCTAAGCCGATAGCCATTGTACTGCCAGAGAGTTTGGAGCAGCTGCAGAAAAGTGTAGCATGCTGTAGAGAAGGCTTCATGGAAATAAGAGTAAGATGTGGTGGACACAGCTATGAAGGGACTTCATATGTTGCTGATGATGGCACTCCTTTTGTCATCATTGACATGATGAATTTGAACCATGTTTGGGTGGACATGGAGACAGAAACAGCATGGGTTGAAGGTGGTGCAACATTGGGAGAGACTTACTATGCAATCTCTCAGGCAAGCAATGAACATGGATTCTCAGGTGGGTCATGTCCAACTGTTGGAGTTGGAGGACACATTGGTGGTGGTGGATTTGGAATTTTGTCTAGAAAGTATGGTCTCGCGGCAGATAACGTGGTGGATGCCCTTCTAGTCAATGCTGACGGAAAATTGTTCGACCGCGAAACCATGGGAGAAGATGTGTTTTGGGCCATTAGAGGAGGAGGAGGTGGTCTTTGGGGGATCATTTATGCCTGGAAAATCAAGGTGTTGAAATTGCCTCAAGTTGTAACTAGTTTCACTGTATCAAGAACTGGCACAAAAAGGCATGTTGCCAATCTAGTGCACAAATGGCAAAATGTAGCACCAAACTTGGAAGATGACTTCTACTTGTCATGCTTTGTTGGTGCTGGCTTGCCTCAAGCTAAAACCAAAGGGTTATCAACAACATTTAACGGCTTCTATCTCGGTCCTAGGGCCGGTGCCATATCCATCCTAGACCATGCCTTTCCTGAGTTGGGTATTGTAGAAGAAGAATGCATAGAAATGAGTTGGATTCAGTCAACTGTTTTCTTCTCTGGCCTAAGTGATGGAGCCTCGGTCTCTGACTTGAACAACAGGTATCTGCAAGAAAAACAATATTTCAAGGCTAAATCAGATTATGTAAAGAAACATGTTCCTCTTGTGGGCATAGAAACTGCACTAGACATCCTAGAAAAGGAGCCTAAGGGATATGTTATTTTGGACCCTTATGGTGGAAAGATGCATAATATAAGCAGTGAATCTATTGCTTTTCCCCACAGAAGAGGAAACTTGTTTACAATTCAGTATCTGATATATTGGAAAGAAGCTGACAATGACAAAAACAGTGATTATGTTGATTGGATAAGAGGGTTCTATGCTGCTATGACTCCCTTTGTCTCATGGGGTCCAAGGGCTGCGTATGTTAATTACATGGACTTTGACCTTGGAGTGATGGAGCGGATTAGCAATGGTGCTAATATGAAAGATGTTGTGGAACATGCAAGGGTTTGGGGTGAAAAGTACTTCTTGAGTAACTATGACAGGTTGGTGAGGGCCAAGACTCTGATTGATCCTAACAATGTTTTCACCAATGACCAGGGCATTCCTCCCATATCTTTGACCATTTCTGATGTCAAACCACAGAGCAAATAA
Predicted protein sequences of Glyma.10g177100
>Glyma.10g177100.1.p sequence-type=predicted peptide transcript=Glyma.10g177100.1 locus=Glyma.10g177100 ID=Glyma.10g177100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFYFLKRLCLLCFLLLSFDVSLCSCASLRDLASCLDNHDIKNFTTLPYKEHDHSSAYNYYKILNFSIQNLRFAEPVIPKPIAIVLPESLEQLQKSVACCREGFMEIRVRCGGHSYEGTSYVADDGTPFVIIDMMNLNHVWVDMETETAWVEGGATLGETYYAISQASNEHGFSGGSCPTVGVGGHIGGGGFGILSRKYGLAADNVVDALLVNADGKLFDRETMGEDVFWAIRGGGGGLWGIIYAWKIKVLKLPQVVTSFTVSRTGTKRHVANLVHKWQNVAPNLEDDFYLSCFVGAGLPQAKTKGLSTTFNGFYLGPRAGAISILDHAFPELGIVEEECIEMSWIQSTVFFSGLSDGASVSDLNNRYLQEKQYFKAKSDYVKKHVPLVGIETALDILEKEPKGYVILDPYGGKMHNISSESIAFPHRRGNLFTIQYLIYWKEADNDKNSDYVDWIRGFYAAMTPFVSWGPRAAYVNYMDFDLGVMERISNGANMKDVVEHARVWGEKYFLSNYDRLVRAKTLIDPNNVFTNDQGIPPISLTISDVKPQSK*






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