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Report for Sequence Feature Glyma.11g031500

Feature Type:gene_model
Chromosome:Gm11
Start:2307470
stop:2311815
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G12110.1AT nitrate transporter 1.1 JGI N/AIEA
GO:0006810GO-bp transport JGI N/AIEA
GO:0006857GO-bp oligopeptide transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005215GO-mf transporter activity EnsemblGenomesN/AIEA
GO:0005215GO-mf transporter activity JGI N/AIEA
GO:0022857GO-mf transmembrane transporter activity EnsemblGenomesN/AIEA
KOG1237 KOG H+/oligopeptide symporter JGI N/AIEA
PTHR11654Panther OLIGOPEPTIDE TRANSPORTER-RELATED JGI N/AIEA
PTHR11654:SF37Panther JGI N/AIEA
PF00854PFAM POT family JGI N/AIEA

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.01g210500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Corresponding NameAnnotation VersionEvidenceComments
Glyma11g03430 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.11g031500.1 sequence-type=CDS polypeptide=Glyma.11g031500.1.p locus=Glyma.11g031500 ID=Glyma.11g031500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCAACCTCCCTACAACTCAAGGGAAAGCCATCCCTGATGCCTCCGACTACAAGGGCCGCCCCGCCGAGCGCTCTAAAACCGGTGGTTGGACCGCTTCCGCCATGATATTAGGAGGAGAAGTGATGGAGAGGTTGACAACACTAGGCATCGCGGTGAATTTGGTAACATATTTGACTGGGACCATGCATTTGGGTAATGCTGCCTCTGCCAACGTTGTAACCAACTTCTTGGGAACCTCCTTCATGCTCTGTCTGCTCGGTGGCTTCCTCGCCGATACTTTCCTCGGAAGATACCGCACCATCGCCATCTTCGCTGCCGTTCAAGCAACTGGTGTGACAATCTTGACAATATCAACCATAATTCCGAGCCTTCACCCTCCAAAGTGCAACGGAGACACCGTGCCACCTTGCGTGAGAGCAAATGAGAAACAATTAACGGTGCTTTATTTGGCGCTTTATGTAACGGCGCTCGGCACCGGAGGTTTGAAATCGAGTGTGTCCGGGTTCGGTTCGGATCAGTTCGATGATTCGGACGACGACGAGAAGAAGCAGATGATAAAGTTCTTCAACTGGTTCTACTTCTTCGTGAGCATAGGGTCTCTGGCCGCAACCACGGTTCTTGTGTACGTACAAGACAACATAGGACGAGGTTGGGGTTATGGTATCTGCGCGGGTGCGATCGTGGTGGCACTTCTCGTGTTCTTGTCGGGTACGAGGAAGTACCGTTTCAAGAAACTTGTGGGAAGTCCATTAACTCAGTTTGCGGAAGTGTTCGTGGCTGCTCTGAGAAAGAGGAACATGGAATTGCCCTCTGATTCATCATTGCTCTTTAATGACTACGACCCCAAGAAGCAGACTCTTCCTCATAGCAAGCAGTTCCGTTTCTTGGACAAAGCTGCAATCATGGATTCATCAGAATGCGGAGGTGGAATGAAGAGGAAATGGTATCTTTGCACCCTAACAGACGTGGAAGAAGTGAAAATGATTCTAAGAATGCTACCCATATGGGCCACCACCATCATGTTTTGGACAATCCACGCTCAAATGACCACATTCTCGGTGTCACAAGCGACAACCATGGACCGTCACATAGGAAAAACATTTCAAATGCCCGCGGCATCAATGACCGTTTTCTTAATTGGAACAATTCTCCTAACTGTCCCCTTCTACGACCGTTTCATTGTTCCCGTGGCAAAGAAAGTGCTCAAGAATCCACATGGTTTCACCCCTTTGCAACGCATTGGAGTCGGTTTAGTACTCTCAGTGGTTTCCATGGTGGTAGGAGCACTGATAGAAATAAAGAGACTAAGATATGCCCAATCACATGGTTTGGTAGATAAGCCAGAAGCAAAGATCCCTATGACCGTGTTTTGGTTGATACCACAGAACTTGTTTGTGGGGGCAGGGGAGGCATTTATGTACATGGGGCAGTTGGACTTTTTCCTTAGAGAGTGTCCCAAAGGGATGAAAACAATGAGCACGGGATTGTTCTTGAGCACACTCTCTTTGGGGTTTTTCTTTAGCACCTTGTTAGTGTCTATAGTGAACAAAATGACAGCACATGGTAGGCCATGGCTCGCAGATAATCTTAACCAAGGGAGGCTCTATGACTTTTACTGGCTCTTGGCTATATTGAGTGCTATAAATGTGGTCTTATACTTGGTTTGTGCTAAGTGGTACGTCTACAAGGAGAAGAGGCTTGCTGAAGAGTGCATTGAATTGGAAGAAGCAGATGCTGCTGCTTTCCATGGCCATTGA

>Glyma.11g031500.1.p sequence-type=predicted peptide transcript=Glyma.11g031500.1 locus=Glyma.11g031500 ID=Glyma.11g031500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSNLPTTQGKAIPDASDYKGRPAERSKTGGWTASAMILGGEVMERLTTLGIAVNLVTYLTGTMHLGNAASANVVTNFLGTSFMLCLLGGFLADTFLGRYRTIAIFAAVQATGVTILTISTIIPSLHPPKCNGDTVPPCVRANEKQLTVLYLALYVTALGTGGLKSSVSGFGSDQFDDSDDDEKKQMIKFFNWFYFFVSIGSLAATTVLVYVQDNIGRGWGYGICAGAIVVALLVFLSGTRKYRFKKLVGSPLTQFAEVFVAALRKRNMELPSDSSLLFNDYDPKKQTLPHSKQFRFLDKAAIMDSSECGGGMKRKWYLCTLTDVEEVKMILRMLPIWATTIMFWTIHAQMTTFSVSQATTMDRHIGKTFQMPAASMTVFLIGTILLTVPFYDRFIVPVAKKVLKNPHGFTPLQRIGVGLVLSVVSMVVGALIEIKRLRYAQSHGLVDKPEAKIPMTVFWLIPQNLFVGAGEAFMYMGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFFSTLLVSIVNKMTAHGRPWLADNLNQGRLYDFYWLLAILSAINVVLYLVCAKWYVYKEKRLAEECIELEEADAAAFHGH*







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