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Report for Sequence Feature Glyma.11g196100

Feature Type:gene_model
Chromosome:Gm11
Start:27006535
stop:27013178
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g196100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G60740.1AT ABC transporter family protein JGI N/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016887GO-mf ATPase activity EnsemblGenomesN/AIEA
GO:0016887GO-mf ATPase activity JGI N/AIEA
GO:0042626GO-mf ATPase activity, coupled to transmembrane movement of substances EnsemblGenomesN/AIEA
KOG0061 KOG Transporter, ABC superfamily (Breast cancer resistance protein) JGI N/AIEA
PTHR19241Panther ATP-BINDING CASSETTE TRANSPORTER JGI N/AIEA
PTHR19241:SF19Panther JGI N/AIEA
PF00005PFAM ABC transporter JGI N/AIEA

Expression Patterns of Glyma.11g196100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g196100
ParalogEvidenceComments
Glyma.12g078000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g196100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g20220 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g196100
>Glyma.11g196100.1 sequence-type=CDS polypeptide=Glyma.11g196100.1.p locus=Glyma.11g196100 ID=Glyma.11g196100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGATGAATCTTCCTAAAGAGACAAGGAAGGTTCCTTTTGTTATAGTTGTTGTATTAATAAACTTCATTGTGGGACCCAGACTAATTTTTTGTCAGAAGAGTGGTGGTGGTGGTGGTGGCCTTGAGATAATCGCTCAAGAAGTATATCGTAGTATGTCCAATTATACATCCGTGTTCAAGAGTGCAATAAAAAAAGAATTGGGTTATTGCATAGTTGATGTGGACGCTGATTGGAATGGAGCATTCAATTTCACCAAAGATCTTACCTTTTTGACCATTTGTGCCCAACAACTGAAGGGAGATATTACACAACGAATGTGCACAGAAGCAGAAATACAAGCTTATGGCCAAAGTTTTGCTAGTGGGAAGTCAGGAACCAGATCTAGCTTTTTGAAGCCCAACATAAATTGTAATTTGAGCTCATGGGTTAATGGTTGTGAACCCGGATGGGGTTGCAAAGCTAATCAAAAAGTAGACATTGGTAGTCACAAGAAGGGCATACCTATCAGATCCGTTGATTGCCAACCTTGTTGTGAAGGCTTCTTTTGCCCTCATGGTCTCACTTGCATGATCCCTTGCCCATTAGGCTCTTATTGTCCACGTGCACAACTCAATAAAACTAGTGGAGTATGTGAACCATATCGTTATCAGCTTCCTCCTGGAAAGCCTAACCATACTTGTGGTGGGGCAGATATTTGGGCAGATATTCAGAGTAGTAGTGAGGTGTTCTGTTCAGCAGGGTCATTTTGTCCCTCTACAATTGTAAAAAATCCTTGCAATAAAGGGTATTATTGTAGAACAGGTTCTACTACTCAGGAGCGGTGTTTCAAGTTGGCATCTTGCGAGCCTAAGTCATCAAATCAAAATATTACTGCATATGGTGTCTTAGTTTTTGCTGGCTTGTGTTTTTTGCTTATTATCATATACAATTGTTCTGACCAAGTTCTTGCAACTCGAGAAAAAAGACAAGCAAAATCAAGAGAAAGAGCTGCTCAAAGTGTGCGAGAATCACAAGCACGTGAAAAATGGAAATCTGCAAAAGACACCGCTAAAAAGCATGCAGTAGGACTACAATCACAATTATCACGTACATTTTCTCGCAAAACTTCAAAGAATCCAGATTTGAAAGGTTTTGGTTCTAAACATTCGGATTCTACTTTACCACCTGTTGGTACATCAAAGGGAAAGAAAAAGGACAAAAACAATCTCTCAAAAATAATAAATGACATTGAGGAAAATCCTAATAATTCAGAAGGGTTTAATGTTCAGATAGGAGATAAAAATGTCAAAAAACAAGCACCAAGGGGCAAGCAATTACACACTCAAAGTCAAATTTTCAAGTATGCATATGGCCAGATTGAAAAAGAGAAGGCTTTAGCAGAACAAAACAAAAACTTAACCTTTTCTGGAGTAATTTCAATGGCTAATGACATTGAGATAAGGAAGAGACCTACCATTGAGGTTGCTTTCAAAGACTTAACCCTCACTTTGAAAGGGAAAAATAAACATTTATTGAGATGTGTGACTGGTAAATTACATCCAGGTAGAGTTTCAGCAGTCATGGGTCCATCTGGGGCCGGCAAGACAACATTTCTTTCTGCTTTAACTGGAAAAGCAACTGGATGTCACACAACTGGGCAAGTTCTTGTAAATGGTAAAGAATCTTCTATCAGATCATACAAGAAAATCATAGGTTTTGTGCCACAAGATGATATTGTGCATGGCAATTTGACAGTGGAGGAAAATCTATGGTTTAGTGCTAGATGCAGACTCTCTGCTGATCTACCAAAAGAAGAGAAGGTGTTAGTGGTTGAAAGAGTCATTGAGTCATTAGGTCTACAAGCAATAAGGGATTCTTTAGTTGGGACAGTGGAGAAACGAGGAATCTCTGGAGGTCAAAGGAAAAGAGTAAATGTAGGATTGGAAATGGTTATGGAACCTTCCCTTTTAATTTTGGATGAACCCACTTCTGGTTTGGATAGCTCATCTTCTCAATTACTACTTAGAGCACTTAGACGTGAAGCTCTTGAGGGAGTAAACATATGTATGGTCCTTCACCAACCGAGTTACACCTTGTTCAAGATGTTTGACGATTTTATACTACTTGCAAAGGGAGGCCTGACAGTGTATCATGGACCAGTGAACAAAGTGGAAGAGTATTTTTCAAGCATGGGCATCAATGTCCCTGACCGTGTTAACCCTCCAGATTACTTCATTGACATTTTAGAAGGAATAGTAAAATTAAGCCCAAGCTTAGGAGTGAACTATAAACAACTACCTGTTAGATGGATGCTTCATAATGGGTACCCTGTGCCCATGGATATGCTACAAACTATGGAAGGAATGGCTGCGCCAAGTGGTGAAGGTTCATCACATGGAGCAGCAACTGCTACAGAAAACAACGAAGCACCTTCTTTTGCTGGAGAACTTTGGCAGGATGTAAAGTGCAATGTTGAGATGAAAAAGGATAACCTTCACCTGAACTTCTTAAGTTCAAATGATTTGTCTGATCGATTAACACCAGGAGTGTTCAACCAATACAAATACTTTCTTGGAAGAGTTGGTAAGCAGCGACTAAGAGAAGCTAGAACACAGGCTGTGGATTTTTTGATTTTGCTTTTAGCTGGCCTTTGCTTAGGAACACTTGCTAAAGTGAGTGATGAATCATTTGGAGCAACTGGTTACACATACACTGTAATAGCAGTATCTCTCCTTTCTAAAATCGCAGCTTTAAGATCATTCTCATTGGATAAGTTGCACTATTGGCGAGAAAGTTCTTCAGGCATGAGTAGTTTGGCTTACTTTCTATCAAAAGATACCGTTGACCATTTTAGCACAATTATCAAGCCACTAGTTTACCTTTCCATGTTTTATTTCTTCAACAATCCAAGATCTTCAGTCACAGATAACTACATGGTTCTGTTGTGTTTAGTCTATTGTGTCACTGGCATAGCTTATGTGTTAGCAATCTTTCTTCAACCAGGTCCAGCACAACTGTGGTCAGTGTTACTTCCAGTAGTTTTGACTCTGGTAGCAACCTATAGCAATGAGGAAGATAGCAAATATATAAAATTTCTATCTGACTTGTGCTACACCAAGTGGGCTCTTGAAGCATTTGTAATATCAAATGCTAAAAGATACACTGGAGTTTGGTTAATAAGTCGATGTGGGGCACTCTATACTAATGGCTATGATCTTAAACATTGGTACCAATGTTTAGGCCTTCTTATCGTAATGGGAATCATTAGTCGCATGCTTGCTTTTTCCTGTATGATAACATTCCAGAAGAAATAG
Predicted protein sequences of Glyma.11g196100
>Glyma.11g196100.1.p sequence-type=predicted peptide transcript=Glyma.11g196100.1 locus=Glyma.11g196100 ID=Glyma.11g196100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMMNLPKETRKVPFVIVVVLINFIVGPRLIFCQKSGGGGGGLEIIAQEVYRSMSNYTSVFKSAIKKELGYCIVDVDADWNGAFNFTKDLTFLTICAQQLKGDITQRMCTEAEIQAYGQSFASGKSGTRSSFLKPNINCNLSSWVNGCEPGWGCKANQKVDIGSHKKGIPIRSVDCQPCCEGFFCPHGLTCMIPCPLGSYCPRAQLNKTSGVCEPYRYQLPPGKPNHTCGGADIWADIQSSSEVFCSAGSFCPSTIVKNPCNKGYYCRTGSTTQERCFKLASCEPKSSNQNITAYGVLVFAGLCFLLIIIYNCSDQVLATREKRQAKSRERAAQSVRESQAREKWKSAKDTAKKHAVGLQSQLSRTFSRKTSKNPDLKGFGSKHSDSTLPPVGTSKGKKKDKNNLSKIINDIEENPNNSEGFNVQIGDKNVKKQAPRGKQLHTQSQIFKYAYGQIEKEKALAEQNKNLTFSGVISMANDIEIRKRPTIEVAFKDLTLTLKGKNKHLLRCVTGKLHPGRVSAVMGPSGAGKTTFLSALTGKATGCHTTGQVLVNGKESSIRSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKEEKVLVVERVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFKMFDDFILLAKGGLTVYHGPVNKVEEYFSSMGINVPDRVNPPDYFIDILEGIVKLSPSLGVNYKQLPVRWMLHNGYPVPMDMLQTMEGMAAPSGEGSSHGAATATENNEAPSFAGELWQDVKCNVEMKKDNLHLNFLSSNDLSDRLTPGVFNQYKYFLGRVGKQRLREARTQAVDFLILLLAGLCLGTLAKVSDESFGATGYTYTVIAVSLLSKIAALRSFSLDKLHYWRESSSGMSSLAYFLSKDTVDHFSTIIKPLVYLSMFYFFNNPRSSVTDNYMVLLCLVYCVTGIAYVLAIFLQPGPAQLWSVLLPVVLTLVATYSNEEDSKYIKFLSDLCYTKWALEAFVISNAKRYTGVWLISRCGALYTNGYDLKHWYQCLGLLIVMGIISRMLAFSCMITFQKK*






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