Report for Sequence Feature Glyma.12g078000
Feature Type: gene_model
Chromosome: Gm12
Start: 6072988
stop: 6079965
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.12g078000
Expression Patterns of Glyma.12g078000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.12g078000
Paralog Evidence Comments
Glyma.11g196100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.12g078000 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma12g08290 Wm82.a1.v1.1 IGC As supplied by JGI
Coding sequences of Glyma.12g078000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.12g078000.1 sequence-type=CDS polypeptide=Glyma.12g078000.1.p locus=Glyma.12g078000 ID=Glyma.12g078000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCATGAATCTTCCTAACCAAACAAGGAAGGTTCCTTTTGTTATAGTTGTTGTATTAATAAACTTCATTGTGGGACCCAGGCTAATTTTTTGTCAGAAGAGTAGTGGTGGTGGTGGCGGCCTTGAGATAATCGCTCAAGAAGTATACCGTAGCATGTCCAATTATACATCTGTGTTCAAGAGTGCAATAAAAAAAGAATTGGGTTATTGCATAGTTGATGTGGATGCTGATTGGAATGGAGCATTCAATTTCACCAAAGATCTTACCTTTTTGACCATTTGTGCCCAACAATTGAAAGGAGATATTACACAACGCATGTGCACAGAAGCAGAAATACAAGCTTATGGCCAAAGTTTTGCTAGTGGGAAGTCAGGAACCAGATCCAGCTTCTTGAAACCCAACATAAATTGTAATTTGAGCTCATGGGTTAATGGTTGTGAACCCGGATGGGGTTGCAAAGCTAATAAAAAAGTAGACATTGGTAGTAACAAAAAGGACATACCTATTAGATCCCTTGATTGTCAACCTTGTTGTGAAGGCTTCTTTTGCCCTCATGGTCTCACTTGCATGATACCTTGCCCATTAGGCTCTTATTGTCCACGTGCACAGCTCAATAAAACTAGTGGAGTATGTGAACCATATCGTTATCAGCTTCCTCCTGGAAAGCCTAACCATACTTGTGGTGGGGCAGATATTTGGGCAGATATTCAGAGTAGCGGTGAGGTGTTCTGTTCAGCAGGGTCATTTTGTCCCTCTACAATTGTAAAAAATCCTTGCAATAAAGGGTATTATTGTAGAACAGGTTCTACTACTCAGGAACGTTGTTTCAAGTTGGCATCTTGTGAGCCTAAGTCATCAAATCAAAATATTACTGCATATGGTGTCTTGGTTTTTGCTGGCTTGTGTTTTTTGCTTATTATCATATACAATTGTTCTGACCAAGTTCTTGCAACTCGAGAAAAAAGACAAGCAAAATCAAGAGAAAGGGCTGCACAAAGTGTGCGAGAATCACAAGCACGTGAAAAATGGAAATCTGCAAAAGACGTGGCTAAAAAACATGCAGTAGGACTACAGTCACAATTGTCACGTACATTTTCTCGCAAAACTTCAAAGAAGCCAGATTTGAAAGGTGCTGCTTTACCACCTGTTGGTACATCAAAAGGAAAGAAAAAGGACAAAAATAATCTCTCAAAAATAATAAATGACATTGAGGAAAATCCTGATAGTTCAGAAGGGTTTAATGTTCAGATAGGAGATAAAAATGTCAAGAAACAAGCACCAAGGGGTAAGCAATTACACACTCAAAGTCAAATTTTCAAGTATGCATATGGTCAGATTGAAAAAGAGAAGGCTTTAGCAGAACAAAACAAAAACTTAACCTTTTCTGGAGTAATTTCAATGGCTAATGACATTGAGATAAGGAAGAGACCTACCATTGAGGTTGCTTTCAAAGACTTAACCCTCACTTTGAAAGGGAAAAACAAACATTTATTGAGATGTGTGACTGGTAAATTACATCCTGGTAGAGTTTCAGCAGTCATGGGGCCATCTGGGGCTGGCAAGACAACATTTCTTTCAGCTTTAACTGGAAAAGCAACTGGGTGCCACACAACTGGGCAAGTTCTTGTAAATGGTAAAGAATCTTCTATCAGGTCATACAAGAAAATCATTGGGTTTGTGCCACAAGATGATATTGTGCATGGCAATTTGACAGTGGAGGAAAATCTATGGTTTAGTGCTAGATGCAGACTCTCTGCTGATCTACCAAAAGAAGAGAAGGTGTTAGTGGTTGAAAGAGTCATTGAGTCATTAGGTCTACAAGCAATAAGAGATTCTTTAGTTGGGACAGTGGAGAAACGAGGAATCTCGGGAGGTCAAAGGAAAAGAGTAAATGTTGGATTGGAAATGGTTATGGAACCTTCCCTTTTAATTTTGGACGAACCCACTTCTGGATTGGATAGTTCATCTTCTCAATTACTACTTAGAGCACTTAGACGTGAAGCTCTTGAGGGAGTAAACATATGTATGGTCCTTCACCAACCAAGTTACACCTTGTTCAAGATGTTTGACGATTTTATACTACTTGCAAAGGGAGGTCTTACAGTGTATCATGGACCAGTGAACAAAGTGGAAGAGTATTTTTCAAGCATGGGCATTAATGTCCCTGACCGTGTTAACCCTCCAGATTACTTCATTGACATTTTAGAAGGAATAGTAAAATTAAGCCCGAGCTTAGGAGTGAACTATAAACAACTACCTGTTAGATGGATGCTTCATAATGGGTACCCTGTGCCCATGGATATGCTAGCAACTATGGAAGGAATGGCCGCGCCAAGTGGTGAAGGTTCATCACATGGAGCAGCAACTGCTACACAAAACAATGAGGCACCTTCTTTTGCTGGAGAACTTTGGCAGGATGTGAAGTGCAATGTTGAGATGAAAAAGGATATCCTTCACCTTAACTTCTTAAGCTCAAATGATTTGTCTAATCGAATAACACCAGGAGTGTTCAACCAATACAAATACTTTCTTGGAAGAGTTGGTAAGCAGCGACTAAGAGAAGCTAGAACACAGGCTGTGGATTTTTTGATTTTGCTATTAGCTGGCCTTTGCTTAGGAACACTTGCTAAAGTGAGTGATGAATCATTTGGAGCAACTGGTTACACATACACTGTAATAGCAGTATCTCTCCTTTCTAAAATTGCGGCTTTAAGATCATTCTCATTGGATAAGTTGCACTACTGGCGAGAAAGTTCTTCAGGCATGAGTAGTTTGGCTTACTTTCTATCAAAGGATACCGTCGACCATTTTAGCACAATTATCAAGCCACTAGTTTACCTTTCAATGTTTTATTTCTTCAACAATCCAAGATCTTCAGTCACAGATAACTACATGGTTCTGTTGTGTTTAGTCTATTGTGTCACTGGCATAGCTTATGTGTTAGCAATCTTTCTTCAACCAGGTCCAGCCCAATTGTGGTCAGTGTTACTTCCAGTAGTTTTGACTTTGGTAGCAACCTATAGCAGTGAAAAAGATAGCAAATATATAAAATTTCTATCTGACTTGTGCTACACCAAGTGGGCTCTTGAAGCATTTGTAATATCAAATGCTAAAAGATACACTGGAGTTTGGTTATTAAGTCGATGTGGTGCACTCTATACTAATGGCTATGATCTTAAACATTGGTACCAATGTTTAGGCCTTCTTATCGTAACGGGAATCATTAGTCGCATGCTTGCATTTTTCTGTATGATAACCTTCCAGAAGAAATAG
Predicted protein sequences of Glyma.12g078000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.12g078000.1.p sequence-type=predicted peptide transcript=Glyma.12g078000.1 locus=Glyma.12g078000 ID=Glyma.12g078000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIMNLPNQTRKVPFVIVVVLINFIVGPRLIFCQKSSGGGGGLEIIAQEVYRSMSNYTSVFKSAIKKELGYCIVDVDADWNGAFNFTKDLTFLTICAQQLKGDITQRMCTEAEIQAYGQSFASGKSGTRSSFLKPNINCNLSSWVNGCEPGWGCKANKKVDIGSNKKDIPIRSLDCQPCCEGFFCPHGLTCMIPCPLGSYCPRAQLNKTSGVCEPYRYQLPPGKPNHTCGGADIWADIQSSGEVFCSAGSFCPSTIVKNPCNKGYYCRTGSTTQERCFKLASCEPKSSNQNITAYGVLVFAGLCFLLIIIYNCSDQVLATREKRQAKSRERAAQSVRESQAREKWKSAKDVAKKHAVGLQSQLSRTFSRKTSKKPDLKGAALPPVGTSKGKKKDKNNLSKIINDIEENPDSSEGFNVQIGDKNVKKQAPRGKQLHTQSQIFKYAYGQIEKEKALAEQNKNLTFSGVISMANDIEIRKRPTIEVAFKDLTLTLKGKNKHLLRCVTGKLHPGRVSAVMGPSGAGKTTFLSALTGKATGCHTTGQVLVNGKESSIRSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKEEKVLVVERVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFKMFDDFILLAKGGLTVYHGPVNKVEEYFSSMGINVPDRVNPPDYFIDILEGIVKLSPSLGVNYKQLPVRWMLHNGYPVPMDMLATMEGMAAPSGEGSSHGAATATQNNEAPSFAGELWQDVKCNVEMKKDILHLNFLSSNDLSNRITPGVFNQYKYFLGRVGKQRLREARTQAVDFLILLLAGLCLGTLAKVSDESFGATGYTYTVIAVSLLSKIAALRSFSLDKLHYWRESSSGMSSLAYFLSKDTVDHFSTIIKPLVYLSMFYFFNNPRSSVTDNYMVLLCLVYCVTGIAYVLAIFLQPGPAQLWSVLLPVVLTLVATYSSEKDSKYIKFLSDLCYTKWALEAFVISNAKRYTGVWLLSRCGALYTNGYDLKHWYQCLGLLIVTGIISRMLAFFCMITFQKK*