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Report for Sequence Feature Glyma.18g246900

Feature Type:gene_model
Chromosome:Gm18
Start:53429396
stop:53432779
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g246900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G48370.1AT Thioesterase/thiol ester dehydrase-isomerase superfamily protein JGI N/AIEA
KOG2763 KOG Acyl-CoA thioesterase JGI N/AIEA
PTHR12655Panther ACYL-COA THIOESTERASE JGI N/AIEA
PF03061PFAM Thioesterase superfamily JGI N/AIEA
PWY-1121SoyCyc9 suberin monomers biosynthesis Plant Metabolic Network ISS
PWY-321SoyCyc9 cutin biosynthesis Plant Metabolic Network ISS
PWY-5148SoyCyc9 acyl-CoA hydrolysis Plant Metabolic Network ISS
PWY-6733SoyCyc9 sporopollenin precursors biosynthesis Plant Metabolic Network ISS
GN7V-48260SoyCyc9-rxn acyl-CoA hydrolase Plant Metabolic Network ISS

Expression Patterns of Glyma.18g246900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g246900
ParalogEvidenceComments
Glyma.09g246100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g246900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g48220 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g246900
>Glyma.18g246900.1 sequence-type=CDS polypeptide=Glyma.18g246900.1.p locus=Glyma.18g246900 ID=Glyma.18g246900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTTGAATTCCTCTCCTTCCAACAACACAATTGCCGTGAATGGAACAATCCCCGTCGCTTCCACGTTCGCAACCGCCACCGCGCCGTCGGATAACCCTCCGCCGGCGGACAGCTCCGGCGACCGGAAACCCATCGCCCTGTGGCCGGGGATGTACCATTCTCCGGTGACCACCGCCCTATGGGAAGCTCGCAGCAATATTTTCGAGAGGCTTCTGGACCCTCCCAGGGACGCTCCTCCGCAGAGTGAATTGCTCACGAGAACCCCCTCGCAGAGCAGGACCAGCATCTTGTACAACTTCTCCTCTGATTTCGTGCTCAGAGAACAGTATAGGGATCCCTGGAATGAGGTTCGAATTGGGAAGTTGCTCGAAGATCTTGATGCCCTCGCTGGAACTATTTCCGTCAAGCATTGTTCTGATGAAGCTAGCACAACAAGGCCACTTATAGTTGTCACTGCTTCAGTTGATAAGATTGTACTAAAGAAGCCAATTAGTGTTGACATTGATCTCAAGATAGTTGGTTTTGTTATATGGGTTGGGCACTCTTCAATAGAGATTCAACTGGAGGTTACTCAGTCCAATGAAGAGGGCAATGATTCAGACTCAGTAGCACTGACAGCCAACTTCATATTTGTTGCTCGGGACTCAAAAACTGGGAAAGCTGCTCCGGTGAATCGACTTTCACCAGAAAATGCTCATGAAAAACTTCTGTTTGAACAAGCTGAGGCAAGAAGTAATTTGAGGAAAACGAAAAGAGGAGGGGAAAAGAGGGACTTTGAGAATGGGGAGAAAAATAGGCTTCGGGCCCTATTGGCTGAAGGAAGAATCTTCTGTGACATGCCAGCTTTAGCAGACCGAAACAGCATTCTTCTAAAGGATACCAGCCTTGAGAATGCCTTAATATGCCAGCCACAGCAAAGGAACATCCATGGTCGAATATTTGGAGGTTTCTTGATGCATCGTGCATTTGAATTGGCTTTCTCAACAGCATATGCCTTTGCTGGATTAGCTCCTTGCTTTCTTGAAGTTGATCATGTTGATTTCTTAAGACCTGTTGATGTAGGGGACTTTTTGCGTCTCAAATCTTGTGTTCTGTACACGGAGGTTCACGATCCAGATCAGCCACTTATCAACGTTGAAGTTGTTGCTCATGTTACACGACCTGAGCTGCGTACTAGTGAGGTATCAAATACTTTCCACTTCTCTTTCACTGTCCGTCCAGAAGCCAAGGCGATGAAAAATGGATTTAAACTTCGCAATGTAGTACCAGCAACAGAGGAAGAAGCACGACGTATATTAGAGCGCATAGATGCTGACAACTTGAATGAATTCTTCAGAGCATAA
Predicted protein sequences of Glyma.18g246900
>Glyma.18g246900.1.p sequence-type=predicted peptide transcript=Glyma.18g246900.1 locus=Glyma.18g246900 ID=Glyma.18g246900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDLNSSPSNNTIAVNGTIPVASTFATATAPSDNPPPADSSGDRKPIALWPGMYHSPVTTALWEARSNIFERLLDPPRDAPPQSELLTRTPSQSRTSILYNFSSDFVLREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDEASTTRPLIVVTASVDKIVLKKPISVDIDLKIVGFVIWVGHSSIEIQLEVTQSNEEGNDSDSVALTANFIFVARDSKTGKAAPVNRLSPENAHEKLLFEQAEARSNLRKTKRGGEKRDFENGEKNRLRALLAEGRIFCDMPALADRNSILLKDTSLENALICQPQQRNIHGRIFGGFLMHRAFELAFSTAYAFAGLAPCFLEVDHVDFLRPVDVGDFLRLKSCVLYTEVHDPDQPLINVEVVAHVTRPELRTSEVSNTFHFSFTVRPEAKAMKNGFKLRNVVPATEEEARRILERIDADNLNEFFRA*






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