SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.19g218700

Feature Type:gene_model
Chromosome:Gm19
Start:47115601
stop:47121795
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g218700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G02400.1AT gibberellin 2-oxidase 6 JGI N/AIEA
GO:0009416GO-bp response to light stimulus EnsemblGenomesN/AIEA
GO:0045487GO-bp gibberellin catabolic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0016706GO-mf oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0052634GO-mf C-19 gibberellin 2-beta-dioxygenase activity EnsemblGenomesN/AIEA
KOG0143 KOG Iron/ascorbate family oxidoreductases JGI N/AIEA
PTHR10209Panther OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEIN JGI N/AIEA
PTHR10209:SF55Panther JGI N/AIEA
PF03171PFAM 2OG-Fe(II) oxygenase superfamily JGI N/AIEA
PWY-102SoyCyc9 gibberellin inactivation I (2β-hydroxylation) Plant Metabolic Network ISS
GN7V-58416SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.19g218700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g218700
ParalogEvidenceComments
Glyma.03g221600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g218700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g40640 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g218700
>Glyma.19g218700.1 sequence-type=CDS polypeptide=Glyma.19g218700.1.p locus=Glyma.19g218700 ID=Glyma.19g218700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTGTGCCTTCTCCTTCTCCAACTTCTATCAAGACAAGTTACAAGAAAAAGAAGACGATAATAAAAATTCCAACGATAGACCTATCCATGGAAAGGACAGAGTTGTCGGAAACAGTGGTGAAAGCCTGCGAGGAATACGGCTTCTTCAAGGTTGTTAACCACAATGTTCCGAAGGAGGTTATTGCAAGAATGGAAGAAGAGGGTGCAGAGTTTTTTGGCAAAGCCACCTACGAGAAGCGTGGAGCTGGCCCAGCAAGTCCTTTCGGTTATGGCTTCAGCAATATCGGGCCCAACGGAGATATGGGTGACCTAGAGTATCTTCTGCTTCATGCTAACCCTCTTTCCGTCTCTGAGAGATCCAAAACCATCGCTAATGACTCCACCAAGTTCAGTTGTGTTGTGAATGATTATGTAGAAGCAGTAAAAGAAGTAACGTGCGAGATTTTAGATCTGGTGGTTGAGGGATTAGGGGTCCCAGACAAGTTCGCACTAAGCAGGCTCATTAGAGATGTGAATAGTGATTCAGTTCTGAGGATCAATCACTACCCTCCATTGAACCAGAAGGTGAAGGGCAACAAGAATAGCATTGGTTTTGGGGCGCATTCTGACCCTCAGATCTTGACCATCATGCGGTCCAATGACGTGGGTGGGCTTCAAATTTACACCCGTGATGGGTTGTGGATTCCTGTCCCTCCTGACCCCAATCAATTCTTTGTCATGGTGGGTGATGTCTTCCAGGTTTTGACAAATGGAAAGTTCATGAGTGTGAGGCACAGGGCATTAACCAACACATTGAAGGCAAGGATGTCAATGATGTACTTTGCAGCACCACCACTTGATTGGTGGATCACTCCGCTACCCAAGATGGTGTCACCACCACAAAATCCAAGTCTATATAAGCCCTTCACATGGGCCCAGTACAAGAAAGCAACATATTCCTTACGCCTCGGAGATTCTCGACTTGATCTCTTCAAGGCCCAGCTAGATACCCATCATGTATCTGCCTCTCCATCACAAATTCAATGTTAG
Predicted protein sequences of Glyma.19g218700
>Glyma.19g218700.1.p sequence-type=predicted peptide transcript=Glyma.19g218700.1 locus=Glyma.19g218700 ID=Glyma.19g218700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVVPSPSPTSIKTSYKKKKTIIKIPTIDLSMERTELSETVVKACEEYGFFKVVNHNVPKEVIARMEEEGAEFFGKATYEKRGAGPASPFGYGFSNIGPNGDMGDLEYLLLHANPLSVSERSKTIANDSTKFSCVVNDYVEAVKEVTCEILDLVVEGLGVPDKFALSRLIRDVNSDSVLRINHYPPLNQKVKGNKNSIGFGAHSDPQILTIMRSNDVGGLQIYTRDGLWIPVPPDPNQFFVMVGDVFQVLTNGKFMSVRHRALTNTLKARMSMMYFAAPPLDWWITPLPKMVSPPQNPSLYKPFTWAQYKKATYSLRLGDSRLDLFKAQLDTHHVSASPSQIQC*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo