Report for Sequence Feature Glyma.19g222000
Feature Type: gene_model
Chromosome: Gm19
Start: 47396909
stop: 47399851
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.19g222000
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G09530.1 AT
phytochrome interacting factor 3
JGI N/A IEA
GO:0046983 GO-mf
protein dimerization activity
EnsemblGenomes N/A IEA
GO:0046983 GO-mf
protein dimerization activity
JGI N/A IEA
KOG4304
KOG
Transcriptional repressors of the hairy/E(spl) family (contains HLH)
JGI N/A IEA
PTHR12565 Panther
STEROL REGULATORY ELEMENT-BINDING PROTEIN
JGI N/A IEA
PTHR12565:SF7 Panther
JGI N/A IEA
PF00010 PFAM
Helix-loop-helix DNA-binding domain
JGI N/A IEA
Proteins Associated with Glyma.19g222000
Locus Gene Symbol Protein Name
PIF3 bHLH transcription factor PIF3
Expression Patterns of Glyma.19g222000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.19g222000
Paralog Evidence Comments
Glyma.03g225000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.19g222000 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma19g40980 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.19g222000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.19g222000.2 sequence-type=transcript locus=Glyma.19g222000 ID=Glyma.19g222000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGAGTACTAGGAATTAAATTGTGAAATGACTTGTATGCCATCCCCAACGAAGACCACATGGACTAGTAGCATTTATTACCAATTCGTCTTAATTCGTAGAACCATACATTAATTCCCTCACCCCCAAGATTTTTCTTTCGTACAAGAAACAACCACCAGACTGCGATCTCCATTATTTGAGTACTACTACTTTGCATAAAGGGTTCAACAATTCGTGCGTGCACAGTGCCAAATCGTGATCACATGAACTTAATCTTAATCTGTTAGCTAGCTTCAAATGCGTTATTGGGTCTCACAAAAAGGAGCTAGCTAGGAAGTGAATACTACTATTATTTACCTGCCACACACACAGAAACAACATAGATCTAGAAGCAAAGGCAAAGAAGGATTTCAAGCTCAATTGTTTAGCTTAATTAATTTCCTTCAAGCAAATGATGATTCAGAAGATGTTTGACTCCACCCGTTCTGGTATGACAAGAAGCTCCTCCCATGTAGCCTCCATTAATGACAATGATTTCCTTGAGCTGGTGTGGGAAAATGGTGAGATTGTTGTACGAGGAGGTTCATCATCAAACAGATCACGAAAGACAAACGAGGAAAGAATACATGAAGATGCCAGCATTAACAAAAGAACTAGGTTAAACCCATTATACTCACTTGAAGATCACTTTCTACCACAAAGGGACTCTGACATGAGCTCTTCACACCAAAGCAATAATGGCCAAGATTCGTGTCAATCCTCCCAAAGCAAGAATTCCTGCAAGCTTCATGAAGAATTTGCAAACTTACTTAAGCCCGTTACCACAGGCAATAGTCACTTACAACAGTGCTTACCTTCATCTCCGCTCAAGAAACAAAGAACCGATTCAACCCAAACACCAAGACCAGCAAAATGCAACTCAACAGACAAAAAATCATTCATCTCCAGCAAGAGTGGAGGAGATTGAAGCGCTCAAGGTTGACAAATCAGCGAAAGAAACACAGTGTTTTCAGAAGCAAACATCATTAACTGTTGAAAGAAGCACAAAATTACCAACCCCAGCGGTTGATGAACACTCTGAAGCTGCTGGTCATAACTGTGGTGTTCTTGGAATTCACAGATCCCAAGGTCAAACCTCAACCTCAGAAGCACTTAGAGCCAAAGCAAAAGCTTataataataataatattaaCATGTGTCATGAACCGTTGCTAGCATCTTCTTCTGTGTGCTCTCTTGGAGCCTCCAACGACCCAAACCTTGGTTTCAGGAAACATGAGGACACTGATGACTCAACGTATTTAAGTGATAATGATGGAGAGCCTGAAGATATGGTAAAGCAAGATAGGGAGGGTAACAGAGTCAAGAGAAGCAGGAACCCTGAGGTTCATAACTTATCTGAGAAGAAGCGAAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGACCTCATTCCCAACTGTAATAAGGTGGACAAAGCATCAATGCTAGACGATGCCATCGACTATCTGAAGACCCTAAAGCTTCAGTTACAGGCAAATTTTCAGATAATGTCAATGGGAAGTGGGTTATGGCCACTCATGATGGGATTCAGGCCACCACAGCTACCTATTCCACCACTTTCTGCTATCACAGACAACAGACTTATTCAGATGTTTGGTTCCCCAAACCAAATACCACCCATGCCAATGCCTCATGCACCTTTCTTCCCTATCATTGGAAATTCTGCCACACAATCACACTTGGCTAATAACACCACCACCACAGCTGCAGCTACCACCAACTTGGCAGAACATTTAGCTAATTCTCTACATGGAAATGCAACAAAGCTAGCGCCACCAAGTCAGATTTCCTTTCAACACCACCACACCTCTACTAGTACTCCTACACTAGCTACCCCTTTCATTTTTCCACAAAAATAGATAAAAATGTATATGAAGGGAAAACTATTCCTGTAACAAAATTAGATTAGAGATGTTAATTAAAGACGAGTGTAAAGTTGGTTTACCCTTTCCATAAAGATGGCATATATTTTCTGATAATAGAATATATCAGCTTTAGAATCTGAC
Coding sequences of Glyma.19g222000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.19g222000.1 sequence-type=CDS polypeptide=Glyma.19g222000.1.p locus=Glyma.19g222000 ID=Glyma.19g222000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGATTCAGAAGATGTTTGACTCCACCCGTTCTGGTATGACAAGAAGCTCCTCCCATGTAGCCTCCATTAATGACAATGATTTCCTTGAGCTGGTGTGGGAAAATGGTGAGATTGTTGTACGAGGAGGTTCATCATCAAACAGATCACGAAAGACAAACGAGGAAAGAATACATGAAGATGCCAGCATTAACAAAAGAACTAGGTTAAACCCATTATACTCACTTGAAGATCACTTTCTACCACAAAGGGACTCTGACATGAGCTCTTCACACCAAAGCAATAATGGCCAAGATTCGTGTCAATCCTCCCAAAGCAAGAATTCCTGCAAGCTTCATGAAGAATTTGCAAACTTACTTAAGCCCGTTACCACAGGCAATAGTCACTTACAACAGTGCTTACCTTCATCTCCGCTCAAGAAACAAAGAACCGATTCAACCCAAACACCAAGACCAGCAAAAGTGAACTTCTCCAACTTTTCAATACCTGCAGTGTTTCTCAAATCTACTACTACTACTACTACTAATAATTATCAGGGAAACAGTGCAACTCAACAGACAAAAAATCATTCATCTCCAGCAAGAGTGGAGGAGATTGAAGCGCTCAAGGTTGACAAATCAGCGAAAGAAACACAGTGTTTTCAGAAGCAAACATCATTAACTGTTGAAAGAAGCACAAAATTACCAACCCCAGCGGTTGATGAACACTCTGAAGCTGCTGGTCATAACTGTGGTGTTCTTGGAATTCACAGATCCCAAGGTCAAACCTCAACCTCAGAAGCACTTAGAGCCAAAGCAAAAGCTTATAATAATAATAATATTAACATGTGTCATGAACCGTTGCTAGCATCTTCTTCTGTGTGCTCTCTTGGAGCCTCCAACGACCCAAACCTTGGTTTCAGGAAACATGAGGACACTGATGACTCAACGTATTTAAGTGATAATGATGGAGAGCCTGAAGATATGGTAAAGCAAGATAGGGAGGGTAACAGAGTCAAGAGAAGCAGGAACCCTGAGGTTCATAACTTATCTGAGAAGAAGCGAAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGACCTCATTCCCAACTGTAATAAGGTGGACAAAGCATCAATGCTAGACGATGCCATCGACTATCTGAAGACCCTAAAGCTTCAGTTACAGGCAAATTTTCAGATAATGTCAATGGGAAGTGGGTTATGGCCACTCATGATGGGATTCAGGCCACCACAGCTACCTATTCCACCACTTTCTGCTATCACAGACAACAGACTTATTCAGATGTTTGGTTCCCCAAACCAAATACCACCCATGCCAATGCCTCATGCACCTTTCTTCCCTATCATTGGAAATTCTGCCACACAATCACACTTGGCTAATAACACCACCACCACAGCTGCAGCTACCACCAACTTGGCAGAACATTTAGCTAATTCTCTACATGGAAATGCAACAAAGCTAGCGCCACCAAGTCAGATTTCCTTTCAACACCACCACACCTCTACTAGTACTCCTACACTAGCTACCCCTTTCATTTTTCCACAAAAATAG
>Glyma.19g222000.2 sequence-type=CDS polypeptide=Glyma.19g222000.2.p locus=Glyma.19g222000 ID=Glyma.19g222000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCAAGATTCGTGTCAATCCTCCCAAAGCAAGAATTCCTGCAAGCTTCATGAAGAATTTGCAAACTTACTTAAGCCCGTTACCACAGGCAATAGTCACTTACAACAGTGCTTACCTTCATCTCCGCTCAAGAAACAAAGAACCGATTCAACCCAAACACCAAGACCAGCAAAATGCAACTCAACAGACAAAAAATCATTCATCTCCAGCAAGAGTGGAGGAGATTGAAGCGCTCAAGGTTGACAAATCAGCGAAAGAAACACAGTGTTTTCAGAAGCAAACATCATTAACTGTTGAAAGAAGCACAAAATTACCAACCCCAGCGGTTGATGAACACTCTGAAGCTGCTGGTCATAACTGTGGTGTTCTTGGAATTCACAGATCCCAAGGTCAAACCTCAACCTCAGAAGCACTTAGAGCCAAAGCAAAAGCTTATAATAATAATAATATTAACATGTGTCATGAACCGTTGCTAGCATCTTCTTCTGTGTGCTCTCTTGGAGCCTCCAACGACCCAAACCTTGGTTTCAGGAAACATGAGGACACTGATGACTCAACGTATTTAAGTGATAATGATGGAGAGCCTGAAGATATGGTAAAGCAAGATAGGGAGGGTAACAGAGTCAAGAGAAGCAGGAACCCTGAGGTTCATAACTTATCTGAGAAGAAGCGAAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGACCTCATTCCCAACTGTAATAAGGTGGACAAAGCATCAATGCTAGACGATGCCATCGACTATCTGAAGACCCTAAAGCTTCAGTTACAGGCAAATTTTCAGATAATGTCAATGGGAAGTGGGTTATGGCCACTCATGATGGGATTCAGGCCACCACAGCTACCTATTCCACCACTTTCTGCTATCACAGACAACAGACTTATTCAGATGTTTGGTTCCCCAAACCAAATACCACCCATGCCAATGCCTCATGCACCTTTCTTCCCTATCATTGGAAATTCTGCCACACAATCACACTTGGCTAATAACACCACCACCACAGCTGCAGCTACCACCAACTTGGCAGAACATTTAGCTAATTCTCTACATGGAAATGCAACAAAGCTAGCGCCACCAAGTCAGATTTCCTTTCAACACCACCACACCTCTACTAGTACTCCTACACTAGCTACCCCTTTCATTTTTCCACAAAAATAG
Predicted protein sequences of Glyma.19g222000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.19g222000.1.p sequence-type=predicted peptide transcript=Glyma.19g222000.1 locus=Glyma.19g222000 ID=Glyma.19g222000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMIQKMFDSTRSGMTRSSSHVASINDNDFLELVWENGEIVVRGGSSSNRSRKTNEERIHEDASINKRTRLNPLYSLEDHFLPQRDSDMSSSHQSNNGQDSCQSSQSKNSCKLHEEFANLLKPVTTGNSHLQQCLPSSPLKKQRTDSTQTPRPAKVNFSNFSIPAVFLKSTTTTTTNNYQGNSATQQTKNHSSPARVEEIEALKVDKSAKETQCFQKQTSLTVERSTKLPTPAVDEHSEAAGHNCGVLGIHRSQGQTSTSEALRAKAKAYNNNNINMCHEPLLASSSVCSLGASNDPNLGFRKHEDTDDSTYLSDNDGEPEDMVKQDREGNRVKRSRNPEVHNLSEKKRREKINKKMRTLKDLIPNCNKVDKASMLDDAIDYLKTLKLQLQANFQIMSMGSGLWPLMMGFRPPQLPIPPLSAITDNRLIQMFGSPNQIPPMPMPHAPFFPIIGNSATQSHLANNTTTTAAATTNLAEHLANSLHGNATKLAPPSQISFQHHHTSTSTPTLATPFIFPQK*
>Glyma.19g222000.2.p sequence-type=predicted peptide transcript=Glyma.19g222000.2 locus=Glyma.19g222000 ID=Glyma.19g222000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKIRVNPPKARIPASFMKNLQTYLSPLPQAIVTYNSAYLHLRSRNKEPIQPKHQDQQNATQQTKNHSSPARVEEIEALKVDKSAKETQCFQKQTSLTVERSTKLPTPAVDEHSEAAGHNCGVLGIHRSQGQTSTSEALRAKAKAYNNNNINMCHEPLLASSSVCSLGASNDPNLGFRKHEDTDDSTYLSDNDGEPEDMVKQDREGNRVKRSRNPEVHNLSEKKRREKINKKMRTLKDLIPNCNKVDKASMLDDAIDYLKTLKLQLQANFQIMSMGSGLWPLMMGFRPPQLPIPPLSAITDNRLIQMFGSPNQIPPMPMPHAPFFPIIGNSATQSHLANNTTTTAAATTNLAEHLANSLHGNATKLAPPSQISFQHHHTSTSTPTLATPFIFPQK*