Report for Sequence Feature Glyma01g03410
Feature Type: gene_model
Chromosome: Gm01
Start: 2907609
stop: 2911173
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g03410
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G70530 AT
Annotation by Michelle Graham. TAIR10: cysteine-rich RLK (RECEPTOR-like protein kinase) 3 | chr1:26588750-26591379 REVERSE LENGTH=646
SoyBase E_val: 4.00E-118 ISS
GO:0006468 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein phosphorylation
SoyBase N/A ISS
GO:0009627 GO-bp
Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance
SoyBase N/A ISS
GO:0031347 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of defense response
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0004672 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein kinase activity
SoyBase N/A ISS
GO:0004674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016301 GO-mf
Annotation by Michelle Graham. GO Molecular Function: kinase activity
SoyBase N/A ISS
GO:0016772 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups
SoyBase N/A ISS
KOG0198
KOG
MEKK and related serine/threonine protein kinases
JGI ISS
PTHR24420 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24420:SF433 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF01657 PFAM
Domain of unknown function DUF26
JGI ISS
PF07714 PFAM
Protein tyrosine kinase
JGI ISS
UniRef100_B9SPH8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Kinase, putative n=1 Tax=Ricinus communis RepID=B9SPH8_RICCO
SoyBase E_val: 6.00E-140 ISS
UniRef100_I1J564 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J564_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g03410
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma01g03410
Paralog Evidence Comments
Glyma02g04220 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g03410 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g028000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g03410
Coding sequences of Glyma01g03410
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g03410.1 sequence type=CDS gene model=Glyma01g03410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCCCTTGCATCGTTTTTTCTTATCTTCCTTTGTTACCATGCACTTCCTGCTCTTGCTGATCCAAGTGCCACGGAGGTAGCAGTGTTGAGCACCAACACAACAGCCCCAATACCTCAGCGACAAGCTTTCTTAACAAACTTCTATGATGCCTTGGAAGCCTTAACCGCTTTGGTTACAAGGCAAAAGTATGCTCTTATTGTTAAAGGGACTACTCAAAATAATGCCACTGTCTATGCTTTTGGTGAGTGCGCGAAAGATCTTACAAAACCAGATTGTGATGTGTGCTTTGCACAAGAGGCATTAACGGTGGCATGTTTTTCTTTGATGGGTGCTTTCTTATTTAGCCCTCAGGACTTGACTGTTTGTGGAACCGAAGATTTTTGTGGGAATTGGAGTGTGTATAAGGCCAATACTGTGGAGTTGGTGAGAAATTTGAGCATTGAAGCACCAAAGAATGAAGGGTTCTTTGTGGGGTATAAGTTTGTGAATGGCAGTGCCTGTCAGAACTGTTTGGATGAAGCTGTCACTAGGATTAATTCTTGTGCTCCAAAAGTAGAAGGGAAGGCATTGAATGTTGGGTGTTACTTGAGGTATTCCATACACAATTTCTATAATAGTTCAAACAACAATGCCCCTCAAGAAAATCACGCTAGGACACACAAATCTTGCTACAATTGTGGCCGGCTGCAGCATCTGCTTCCCTGGCTTCTGCTGATTGTTGCAACTATGATTTTCTTTGTGAGGACAAAATTACTGAAGCGGAGGAGAGAAAGAAGACAATTTGGTGCACTTTTTGACACGGTGAACAAGTCCAAGCTAAATGGAGCTCTGCCAGATGGAACTACCATGGCTATAAAAAGGCTTAGCTTCAACACATCACAATGGGCATATCATTTCTTCAATGAGGTCAATTTGATCAGTGGCATTCATCACAAAAATCTAGTGAAGCTTTTAGGGTGCAGCATTACAGGACCTGAAAGCCTTCTTGTTTATGAATTTGTGCCTAATCACAGCCTCTATGATCACCTATCTGGTAGAAGGAATTCTCAACAGTTGACATGGGAACCAACATTCTCATTGATGATAACTTCACACCCTAGATTGCTGGTTTTGGACTTGCCAGATTATTTCCAGAAGACAAGTCTCACCTTAGCACAGCCATTTGTGGCACATTCTCTAAAATTAGCCCTTCTGGGTTATATGGCTCCAGAATATGTAGTGCTAGGGAAGTTAACTGAGAAAGCAGATGTCTACAGTTTTGGGGTTCTAATTATGGAAATTATATCCGGCAAGAAGAGCAAATCCTTTGTTTGGAGCCTTTATGGATCAAACAGGCTATGTAACATTGTTGATCCAATCCTAGAGGGAAATTATCCGGCAGAGGTAGCATGCAAACTCCTTAAGATAGGGTTGCTTTTAGTAGTGGAAATGATCAACAACAACCATGAAATTACTCGGCCAACACAACCACCATTTCTTAGTTGTAGTAGTGCAGAATTCAGCAAATCTATTTTACAAGGAGAGAGTTTTCAGCCTAGATCTATGAAGCACCGACACCGACACCGGATACGACACGGACACGTGCTTGAAAGTTTATATGCTATTTATATCCTGGTTTTACTTTCTGATTGA
Predicted protein sequences of Glyma01g03410
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g03410.1 sequence type=predicted peptide gene model=Glyma01g03410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSLASFFLIFLCYHALPALADPSATEVAVLSTNTTAPIPQRQAFLTNFYDALEALTALVTRQKYALIVKGTTQNNATVYAFGECAKDLTKPDCDVCFAQEALTVACFSLMGAFLFSPQDLTVCGTEDFCGNWSVYKANTVELVRNLSIEAPKNEGFFVGYKFVNGSACQNCLDEAVTRINSCAPKVEGKALNVGCYLRYSIHNFYNSSNNNAPQENHARTHKSCYNCGRLQHLLPWLLLIVATMIFFVRTKLLKRRRERRQFGALFDTVNKSKLNGALPDGTTMAIKRLSFNTSQWAYHFFNEVNLISGIHHKNLVKLLGCSITGPESLLVYEFVPNHSLYDHLSGRRNSQQLTWEPTFSLMITSHPRLLVLDLPDYFQKTSLTLAQPFVAHSLKLALLGYMAPEYVVLGKLTEKADVYSFGVLIMEIISGKKSKSFVWSLYGSNRLCNIVDPILEGNYPAEVACKLLKIGLLLVVEMINNNHEITRPTQPPFLSCSSAEFSKSILQGESFQPRSMKHRHRHRIRHGHVLESLYAIYILVLLSD*