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Report for Sequence Feature Glyma01g41850

Feature Type:gene_model
Chromosome:Gm01
Start:53248013
stop:53257118
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G35720AT Annotation by Michelle Graham. TAIR10: DNAJ heat shock N-terminal domain-containing protein | chr2:15016883-15019866 FORWARD LENGTH=538 SoyBaseE_val: 0ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0055122GO-bp Annotation by Michelle Graham. GO Biological Process: response to very low light intensity stimulus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0031072GO-mf Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding SoyBaseN/AISS
KOG0718 KOG Molecular chaperone (DnaJ superfamily) JGI ISS
PTHR24078Panther DNAJ HOMOLOG SUBFAMILY C MEMBER JGI ISS
PTHR24078:SF15Panther DNAJ HOMOLOG SUBFAMILY C MEMBER 18 JGI ISS
PF00226PFAM DnaJ domain JGI ISS
PF11875PFAM Domain of unknown function (DUF3395) JGI ISS
UniRef100_G7JW29UniRef Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein dnaJ n=1 Tax=Medicago truncatula RepID=G7JW29_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1J9W3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J9W3_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g03520 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g209800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma01g41850.2   sequence type=transcript   gene model=Glyma01g41850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAACTCGTGTAAAAAACTCCACAAATAAACTTTTATAGGAGATGGCCTAATTATTTTCCACTCAATTTCTTTTCTAACACGTTGACGTCGGCCAAGGAAGAGAGTAAGCGAAGACCCCTTAAACGTTAAACCCTTTACTTTCCAAACACTGCAAAACCCTAACCTCTGGGGGTTCCAAAATTTCCACGACGAGGCACCGCAATGGACGAACCGAACGAAGCACAAGACAACAGAGAACTCTACGCGCTCTTGAATTTGTCTCCAGAAGCTTCCGATGAAGAAATTCGCAGAGCGTATCGTCAATGGGCGCAAGCCTATCATCCCGATAAATACCAAGCTCCTCACATGAAGGATATTGCTACGGAGAACTTTCAGCGAATATGCGAAGCGTATGAGATTCTTTCAGATCCAAATAAAAGGCAAATATATGATATCTACGGCATGGAGGGGTTGACCTCTGGTTTGGAACTTGGTCCAAAGCTTAATGGAGCTGAAGAGATCAAGGCAGAACTCGAGAGATTGAAGAGGATGAAGGAACGCGAGAAAATGGCGGCGCATTTTCAACCCTCCGGTACAATTGTGGCCAATATGTCTTTGCCACGCTATCTAGACGGAAATGGCATGCTCAGAGGAATGGCTATGACAAGTGAAATCCAGTCTCAGTTATCAAAGCGTAATGCTGTTACGATTGGTGGTAATTTAGCAGTGAATGGAGAGGAAGGCGGTGGAGCTGCTACTGCTGTATTTAGGCATCATCTTTCAGAAGTTTCGTCAGTAGAGGTTGTGGCCTCAGCTGGTCTGCGTGCACTAATTGGGGTGCAAACAACTCGTAATCTATCATCACACTCAGCTGCAACAATGGGCATAGCACTGTCTCTGAAAGACGGTTCATTGAATCTTTCAAATTTATGGACCCGCCAACTGTCAGAAACAGCAAGTGGACATATAGAGCTTGCTTTGGGGCCACATTCATCTGTAACTGTTGGGTGGCAAAAGAAAGATCAGAGAAGGTCTGCCTCTGGAGAAGTGAAGTTTGGCACAGGTTCTTTTGAGACATCAGTTCATTATACTCATCGTTTTTCTCCTAAATCTCTTGGCTGCATTGTGGGAAGAGTTGGGAGTTCTTCCCTTGAGGTTGAAGTCGGTGGTGGGAGGAAGCTATCCAAATTCAGCTCGGTACGCTGGTTGTATATAATAGGAATTCAGGGTATTTCCTGGAAATTTGAGCTGTATCGTGGGGGTCAGAAGTTAATTATTCCTATTTTGCTGACAAGACATCTGAACCCTGTGTTTGCTACTGGAGCATTTGTCGTTCCTGCATCTCTTTACTTTGTTCTAAAGAAACTTTTTATTAAACCTTATTACCTTAGAAGGAATAAACAGAAGGCTCTGGAGGAGAAGGAGAAAACTTCTGCTCAGGTTAAGGAAGCACGAGCTACAGCAGAGAAAGCTCAGAATTTACAACAAAATGTGGCTAATAGGAAAAGAAACAAGCAATTAGAAACAGGTGGACTGGTTATTATGAGAGCACTATATGGAAATCAGAGAATTTTGAACAACTTAAAGTCATCAAGTGAAACAAGTTTTGAATTAACTTCAGAAGTCATTGATGTTACAATACCTTTGAATTTTCTAGTTAATGATTCTGGCCAACTCAAGCTTCATGAAGGTGTAAAAAAATCAGGCATCATGGGTTTCTGTGATCCATGTCCAGGAAGTCCTAAAGACTTGTATGTAGAGTACGTCTATGCTGGCAATCAATACAGGGTATTACCAGTTGCTTGTTATGATTCAAAATTGTTATAATCCTCTCGCATCTGGTTTATCCAAGGGCTAATTAAAATGTTGAAGCAGGTTTGGGCTGGTGATTATGAAGAATTACAGATCCCTCAGGGCAGCCACAGGATATAAAGGATTATTATTAACACATCAATATATCATTGTAACCTCTTGCAGTTTTGCCTGATTTATATACGCTTGAGGTACTACTGCATTTTATCCTGTCAGATGGAATTAGAGGAGGTACCTTTTACGATTTTTGGGCCAGTGGTACCGTCACTTATTTTTTAAATCTTTTATTTTTCCCATAATTTATTACACCCCGAAAATGTATGAAATAAGGATATTTTAGGAGGCGGTTTTAGTATTTTGTCAAGTTGCGTCTCTCTCTCTAAACTATTAACTCTGCTGCTGGATCCCAATTTTGGTTAGTCATACTCCTTTTATTGTTGATTCGTTGCCCGTTCACATAAATTCTTTCTCGAGACAACAGCCAACAGCTGTTGGAGGTTTGATTTGATGTTTGTATTATCAAGTTTTCATTTGGGTTTGTACTTAATATATGATACACTATTTATGACAATAACATCGGTGAATCAAATTGAGCGCCGAAACATGTTTATGTTTACTTGTACCTGCGATTCTGCGAAGGTGCTGATTATCTTTCTGTAGAAC

>Glyma01g41850.1   sequence type=CDS   gene model=Glyma01g41850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGAACCGAACGAAGCACAAGACAACAGAGAACTCTACGCGCTCTTGAATTTGTCTCCAGAAGCTTCCGATGAAGAAATTCGCAGAGCGTATCGTCAATGGGCGCAAGCCTATCATCCCGATAAATACCAAGCTCCTCACATGAAGGATATTGCTACGGAGAACTTTCAGCGAATATGCGAAGCGTATGAGATTCTTTCAGATCCAAATAAAAGGCAAATATATGATATCTACGGCATGGAGGGGTTGACCTCTGGTTTGGAACTTGGTCCAAAGCTTAATGGAGCTGAAGAGATCAAGGCAGAACTCGAGAGATTGAAGAGGATGAAGGAACGCGAGAAAATGGCGGCGCATTTTCAACCCTCCGGTACAATTGTGGCCAATATGTCTTTGCCACGCTATCTAGACGGAAATGGCATGCTCAGAGGAATGGCTATGACAAGTGAAATCCAGTCTCAGTTATCAAAGCGTAATGCTGTTACGATTGGTGGTAATTTAGCAGTGAATGGAGAGGAAGGCGGTGGAGCTGCTACTGCTGTATTTAGGCATCATCTTTCAGAAGTTTCGTCAGTAGAGGTTGTGGCCTCAGCTGGTCTGCGTGCACTAATTGGGGTGCAAACAACTCGTAATCTATCATCACACTCAGCTGCAACAATGGGCATAGCACTGTCTCTGAAAGACGGTTCATTGAATCTTTCAAATTTATGGACCCGCCAACTGTCAGAAACAGCAAGTGGACATATAGAGCTTGCTTTGGGGCCACATTCATCTGTAACTGTTGGGTGGCAAAAGAAAGATCAGAGAAGGTCTGCCTCTGGAGAAGTGAAGTTTGGCACAGGTTCTTTTGAGACATCAGTTCATTATACTCATCGTTTTTCTCCTAAATCTCTTGGCTGCATTGTGGGAAGAGTTGGGAGTTCTTCCCTTGAGGTTGAAGTCGGTGGTGGGAGGAAGCTATCCAAATTCAGCTCGGTACGCTGGTTGTATATAATAGGAATTCAGGGTATTTCCTGGAAATTTGAGCTGTATCGTGGGGGTCAGAAGTTAATTATTCCTATTTTGCTGACAAGACATCTGAACCCTGTGTTTGCTACTGGAGCATTTGTCGTTCCTGCATCTCTTTACTTTGTTCTAAAGAAACTTTTTATTAAACCTTATTACCTTAGAAGGAATAAACAGAAGGCTCTGGAGGAGAAGGAGAAAACTTCTGCTCAGGTTAAGGAAGCACGAGCTACAGCAGAGAAAGCTCAGAATTTACAACAAAATGTGGCTAATAGGAAAAGAAACAAGCAATTAGAAACAGGTGGACTGGTTATTATGAGAGCACTATATGGAAATCAGAGAATTTTGAACAACTTAAAGTCATCAAGTGAAACAAGTTTTGAATTAACTTCAGAAGTCATTGATGTTACAATACCTTTGAATTTTCTAGTTAATGATTCTGGCCAACTCAAGCTTCATGAAGGTGTAAAAAAATCAGGCATCATGGGTTTCTGTGATCCATGTCCAGGAAGTCCTAAAGACTTGTATGTAGAGTACGTCTATGCTGGCAATCAATACAGGGTTTGGGCTGGTGATTATGAAGAATTACAGATCCCTCAGGGCAGCCACAGGATATAA

>Glyma01g41850.2   sequence type=CDS   gene model=Glyma01g41850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGAACCGAACGAAGCACAAGACAACAGAGAACTCTACGCGCTCTTGAATTTGTCTCCAGAAGCTTCCGATGAAGAAATTCGCAGAGCGTATCGTCAATGGGCGCAAGCCTATCATCCCGATAAATACCAAGCTCCTCACATGAAGGATATTGCTACGGAGAACTTTCAGCGAATATGCGAAGCGTATGAGATTCTTTCAGATCCAAATAAAAGGCAAATATATGATATCTACGGCATGGAGGGGTTGACCTCTGGTTTGGAACTTGGTCCAAAGCTTAATGGAGCTGAAGAGATCAAGGCAGAACTCGAGAGATTGAAGAGGATGAAGGAACGCGAGAAAATGGCGGCGCATTTTCAACCCTCCGGTACAATTGTGGCCAATATGTCTTTGCCACGCTATCTAGACGGAAATGGCATGCTCAGAGGAATGGCTATGACAAGTGAAATCCAGTCTCAGTTATCAAAGCGTAATGCTGTTACGATTGGTGGTAATTTAGCAGTGAATGGAGAGGAAGGCGGTGGAGCTGCTACTGCTGTATTTAGGCATCATCTTTCAGAAGTTTCGTCAGTAGAGGTTGTGGCCTCAGCTGGTCTGCGTGCACTAATTGGGGTGCAAACAACTCGTAATCTATCATCACACTCAGCTGCAACAATGGGCATAGCACTGTCTCTGAAAGACGGTTCATTGAATCTTTCAAATTTATGGACCCGCCAACTGTCAGAAACAGCAAGTGGACATATAGAGCTTGCTTTGGGGCCACATTCATCTGTAACTGTTGGGTGGCAAAAGAAAGATCAGAGAAGGTCTGCCTCTGGAGAAGTGAAGTTTGGCACAGGTTCTTTTGAGACATCAGTTCATTATACTCATCGTTTTTCTCCTAAATCTCTTGGCTGCATTGTGGGAAGAGTTGGGAGTTCTTCCCTTGAGGTTGAAGTCGGTGGTGGGAGGAAGCTATCCAAATTCAGCTCGGTACGCTGGTTGTATATAATAGGAATTCAGGGTATTTCCTGGAAATTTGAGCTGTATCGTGGGGGTCAGAAGTTAATTATTCCTATTTTGCTGACAAGACATCTGAACCCTGTGTTTGCTACTGGAGCATTTGTCGTTCCTGCATCTCTTTACTTTGTTCTAAAGAAACTTTTTATTAAACCTTATTACCTTAGAAGGAATAAACAGAAGGCTCTGGAGGAGAAGGAGAAAACTTCTGCTCAGGTTAAGGAAGCACGAGCTACAGCAGAGAAAGCTCAGAATTTACAACAAAATGTGGCTAATAGGAAAAGAAACAAGCAATTAGAAACAGGTGGACTGGTTATTATGAGAGCACTATATGGAAATCAGAGAATTTTGAACAACTTAAAGTCATCAAGTGAAACAAGTTTTGAATTAACTTCAGAAGTCATTGATGTTACAATACCTTTGAATTTTCTAGTTAATGATTCTGGCCAACTCAAGCTTCATGAAGGTGTAAAAAAATCAGGCATCATGGGTTTCTGTGATCCATGTCCAGGAAGTCCTAAAGACTTGTATGTAGAGTACGTCTATGCTGGCAATCAATACAGGGTATTACCAGTTGCTTGTTATGATTCAAAATTGTTATAA

>Glyma01g41850.1   sequence type=predicted peptide   gene model=Glyma01g41850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDEPNEAQDNRELYALLNLSPEASDEEIRRAYRQWAQAYHPDKYQAPHMKDIATENFQRICEAYEILSDPNKRQIYDIYGMEGLTSGLELGPKLNGAEEIKAELERLKRMKEREKMAAHFQPSGTIVANMSLPRYLDGNGMLRGMAMTSEIQSQLSKRNAVTIGGNLAVNGEEGGGAATAVFRHHLSEVSSVEVVASAGLRALIGVQTTRNLSSHSAATMGIALSLKDGSLNLSNLWTRQLSETASGHIELALGPHSSVTVGWQKKDQRRSASGEVKFGTGSFETSVHYTHRFSPKSLGCIVGRVGSSSLEVEVGGGRKLSKFSSVRWLYIIGIQGISWKFELYRGGQKLIIPILLTRHLNPVFATGAFVVPASLYFVLKKLFIKPYYLRRNKQKALEEKEKTSAQVKEARATAEKAQNLQQNVANRKRNKQLETGGLVIMRALYGNQRILNNLKSSSETSFELTSEVIDVTIPLNFLVNDSGQLKLHEGVKKSGIMGFCDPCPGSPKDLYVEYVYAGNQYRVWAGDYEELQIPQGSHRI*

>Glyma01g41850.2   sequence type=predicted peptide   gene model=Glyma01g41850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDEPNEAQDNRELYALLNLSPEASDEEIRRAYRQWAQAYHPDKYQAPHMKDIATENFQRICEAYEILSDPNKRQIYDIYGMEGLTSGLELGPKLNGAEEIKAELERLKRMKEREKMAAHFQPSGTIVANMSLPRYLDGNGMLRGMAMTSEIQSQLSKRNAVTIGGNLAVNGEEGGGAATAVFRHHLSEVSSVEVVASAGLRALIGVQTTRNLSSHSAATMGIALSLKDGSLNLSNLWTRQLSETASGHIELALGPHSSVTVGWQKKDQRRSASGEVKFGTGSFETSVHYTHRFSPKSLGCIVGRVGSSSLEVEVGGGRKLSKFSSVRWLYIIGIQGISWKFELYRGGQKLIIPILLTRHLNPVFATGAFVVPASLYFVLKKLFIKPYYLRRNKQKALEEKEKTSAQVKEARATAEKAQNLQQNVANRKRNKQLETGGLVIMRALYGNQRILNNLKSSSETSFELTSEVIDVTIPLNFLVNDSGQLKLHEGVKKSGIMGFCDPCPGSPKDLYVEYVYAGNQYRVLPVACYDSKLL*







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