Report for Sequence Feature Glyma02g40863
Feature Type: gene_model
Chromosome: Gm02
Start: 46085815
stop: 46089563
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g40863
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G03270 AT
Annotation by Michelle Graham. TAIR10: Adenine nucleotide alpha hydrolases-like superfamily protein | chr3:762136-763075 REVERSE LENGTH=159
SoyBase E_val: 3.00E-52 ISS
GO:0002238 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to molecule of fungal origin
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
PF00582 PFAM
Universal stress protein family
JGI ISS
UniRef100_A8IXR1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Universal stress protein family protein n=1 Tax=Brassica rapa RepID=A8IXR1_BRACM
SoyBase E_val: 2.00E-51 ISS
UniRef100_UPI000233783C UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233783C related cluster n=1 Tax=unknown RepID=UPI000233783C
SoyBase E_val: 4.00E-96 ISS
Expression Patterns of Glyma02g40863
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma02g40863
Paralog Evidence Comments
Glyma14g39190 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g40863 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
References for Glyma02g40863
Coding sequences of Glyma02g40863
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g40863.1 sequence type=CDS gene model=Glyma02g40863 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CTCCATGACAAGCTCTACACAACTTTTACAGCCGCAGAATTTAAGCAAACAAGTAAAAAAATAAAGACAGAAGAACAAATTGATGACCATGAACATATTGACAACGGATTTGCTGGAGAGAAACAGAACTCAACCTTTCAGTTTTTGGCATCATCATTCAGATATGGCAAAGGCACGAACTGTTGGGCCGTTGATAATCTCATCAACAAAGGTGATCAAATCATCTTGATCACCGTTCAGCCTCCCCAAGCTCATCACACCCGAAAGGAGCTTTTTGAGGACACTAGTTCACCTTTAGTGCCTCTGGAGGAATTGAGGGAGTTGAATTTTACTAAGCAATATGAGATTGCCGGGGATCCTGAGGCAAAGGCAGTTGCAAAGGTGTATTGGGGAGATCCAAGGGAGAAGTTGTGTAATGCTGTAGAAGATCTTCACCTGGACTTTTTGGTTGTTGGAAGCAGGGGTTTAGGTCCCATTAAAAGGGTGTTGTTGGGCAGCGTAAGCAATAATGTGATGACAAATGCTTCTTGCCCCGTCACAGTGGTTAAGGGAAAACAATCTTCCAATTCCCATCATTAA
Predicted protein sequences of Glyma02g40863
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g40863.1 sequence type=predicted peptide gene model=Glyma02g40863 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
LHDKLYTTFTAAEFKQTSKKIKTEEQIDDHEHIDNGFAGEKQNSTFQFLASSFRYGKGTNCWAVDNLINKGDQIILITVQPPQAHHTRKELFEDTSSPLVPLEELRELNFTKQYEIAGDPEAKAVAKVYWGDPREKLCNAVEDLHLDFLVVGSRGLGPIKRVLLGSVSNNVMTNASCPVTVVKGKQSSNSHH*