Glyma04g02360 - SoyBase

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Report for Sequence Feature Glyma04g02360

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1638468
stop:	1641656
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76020	AT	Annotation by Michelle Graham. TAIR10: Thioredoxin superfamily protein \| chr1:28532243-28533542 REVERSE LENGTH=225	SoyBase	E_val: 2.00E-81	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
UniRef100_C6T172	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T172_SOYBN	SoyBase	E_val: 2.00E-173	ISS
UniRef100_Q9LNU5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T20H2.2 protein n=2 Tax=Arabidopsis thaliana RepID=Q9LNU5_ARATH	SoyBase	E_val: 4.00E-75	ISS

Expression Patterns of Glyma04g02360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02360

Paralog	Evidence	Comments
Glyma06g02400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g021400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g02360

Limit To All Plant Sequences

>Glyma04g02360.1   sequence type=CDS   gene model=Glyma04g02360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATGTTGCGAACGACAATACTGCAATTCGCTGCGTTGCAGGTTTTGTTTATTCTGTTGGGTGTTGGTGCCGATTACATACCGCCTTCGAGATTTGATGGCTTCGTCTACGGGAAGGGGAACTTGAATTTGTTGGATACGGTTTTGATAGAAGCGTTTTATGACCCAGTGTGCCCAGATAGCAGGGATTCCTGGCCTCCACTCAAACAAGCTCTTCATCACTACGCTTCTCGGGTTTCGCTCCTTCTTCACCTCCTCCCTCTACCTTACCATGACAATGCTTTTGTTACGTCTCGTGCTCTGCACATTGTGAACAATTTGAACGCATCTGCAACGTTCCCCTTGCTGGAGTGGTTCTTCAGGTATCAGGAGAATTTCTATGGGGCTCAAACACGGAACTTATCTAGGGCTTCTATTATAGAGGAAGTAGTGAAGTCTGCAACACAAGTAGTTGGGAGCTCTTATTATAAAACCATAAAGAATGGCTTCAATGACACAACAACTGATATTCAGACCAGAGTTTCTTTTAAGTATGCTGCTTCGAGAGGGGTGTATGGAACGCCATTTTTCTATGTCAATGGATTCTTGTTGCCTGATACTGGAGCTGCTGTTGACTACAAGACTTGGAGAAAGGTCATTGACCCATTGGTTGGTGCTAAGAATAAGAAGAGTATCCAAAATGAAGAGTCCCTTCATTTCTTCTTGTGA

Predicted protein sequences of Glyma04g02360

Limit To All Plant Sequences

>Glyma04g02360.1   sequence type=predicted peptide   gene model=Glyma04g02360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKMLRTTILQFAALQVLFILLGVGADYIPPSRFDGFVYGKGNLNLLDTVLIEAFYDPVCPDSRDSWPPLKQALHHYASRVSLLLHLLPLPYHDNAFVTSRALHIVNNLNASATFPLLEWFFRYQENFYGAQTRNLSRASIIEEVVKSATQVVGSSYYKTIKNGFNDTTTDIQTRVSFKYAASRGVYGTPFFYVNGFLLPDTGAAVDYKTWRKVIDPLVGAKNKKSIQNEESLHFFL*

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