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Report for Sequence Feature Glyma04g12490

Feature Type:gene_model
Chromosome:Gm04
Start:11561279
stop:11571255
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G56180AT Annotation by Michelle Graham. TAIR10: actin-related protein 8 | chr5:22737539-22740986 REVERSE LENGTH=471 SoyBaseE_val: 0ISS
GO:0030029GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament-based process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005200GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of cytoskeleton SoyBaseN/AISS
KOG0676 KOG Actin and related proteins JGI ISS
PTHR11937Panther ACTIN JGI ISS
PTHR11937:SF18Panther ACTIN-RELATED JGI ISS
PF00022PFAM Actin JGI ISS
PF00646PFAM F-box domain JGI ISS
UniRef100_B9T0K2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Actin, macronuclear, putative n=1 Tax=Ricinus communis RepID=B9T0K2_RICCO SoyBaseE_val: 0ISS
UniRef100_I1JVM7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVM7_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g112600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma04g12490.2   sequence type=transcript   gene model=Glyma04g12490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAGGATTCAAACAGAACAGAGAACATTGGGTGGTGTTGTGGCGTTTGGTGAGTTGAGTTCATTCTCAACATGTCGATGCTGCTCAGGAAGGTGTGGGAAAGGGTGTTATGGAGATCTGATTCTTCAACGTCAGCATCAGCATCAGCATCATCTTCATCATCATCATCACCACCAGAAGTGGCATGTTCTGACATGGGCGAGTTGGAGCTGCTACCCAGTGACATCTTGATGCACATTCTGAGACTTTTGGGTCCAAAAGAGGCTGCAAAGTTGAGTGTGGTTTGCAAGGCTTTGAGATCCCTTGTGTCTGATAACAGACTTTGGATTCACTTTCTTCAGACCCATCAGGCTGAGCCCTCTGGGGATTCTGTCTTCTTTGCTGAGACCACCTTGAGCTATGGCTACCCTCTTCCGCCCTTTGCTGGCCATTGGCCCCAACTATCATTCAAGCATATTTATGGCCAGAGAGCACTGGTTCCTGGTTCTATTATCATCGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATACGCATATCCATCAGGGCGTTCAGCAACATTTTTGGAATTTGGTAATATTGAGTCACCAATGTATACTAGGCTTCGACATTTTTTTGCAACTATTTATAACAGGATGCAGGTGAAACCGAATAAACAACCAGTTATTGTTTCTGTGCCAATATGCCATTATGATGATACCGAATCAGCCAAAGCATCTAGGCAACAGCTTAAAGAGGCAATTTACGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGCGCCATCAACCAGGCCACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACGTCTATAGTTCCAATTTTAAACGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTGAAACTTACAGGATTTCTTAGGGAGAAGATGCAACTGAATAATTTAAGTTTTCAATCTTTGTACACTGTTCGCACATTGAAAGAGAATCTATGCTATGTTGCACTTGATTATGAAGCTGAGCTATTGAAAGATACAAAAGCATCATTTGAAGCTGCTGGAGAAGGATGGTTTACCCTTTCAAAAGGGAGGTTTCAGACAGCAGAGATCCTATTCCAGCCACATCTTGCCGGAGTGCAAGCTATGGGTCTGCACCAAGCCATAGCTCTTTGTGTGGAACATTGCCATTCTGCAGATTTAGCATGTGACAGTGATTGGTACAAGACTATAGTCTTATCAGGGGGGACTGCATGCTTACCTGGTTTGGCTGAAAGGATAGAGAAGGAACTCCATGCCTTACTTCCTCCCTACGTGTCCAATGGAATTAGAGTCATACCTCCTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAATTTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTCCGTCAGAAGCCTAGACTCAACCTCATATGGTGATTGTTGTGATACAAAATTTATTTCCTCAATTATGCACCCTCATCCAAAGAGGCAACAACAGAAGATGTGAATTTTAGCAACTGCTTTTGTATGTATAAGTATATTATGATTTCCTTCTTGAAACGAAGCCTATAGTTAACATTCAGGTTGTTAAGAATAATGTAATAAGATTCAAGACTAAACCACAAGTGTGAAGAAACTGTTAATAATATAGTTGAAGAGCAAAACCACAACGTGAGAGGTTTTTTGTAATTAGAAAAATGCCTAGACATTGGAATAATGGAATCCATCTCTGGTTCTTCCATTCAATTTTATGAAATGAGATGGTCCTTTTAAGAATGCCATAAACTTCGAAGATGGCTTACTCTACGAAGTTTAATTTTTCACCTTGAGTTTGGTTATTAGGTCTTTTTTTTGTCTATAGTTGAGGATGACAATTTTTTAATGAACCGAAAACATTATGTCTGCAATGGTTTTACAACTGAACCAAGCAGCACTTCATGGTCACGCCCACCCGAGAAAAGGATCATCATCATTTTATATTTTATGCAATGGAAGGAACAGTAAAGTTGTATACAATGCAGAACAACAGTTTGATGAAGATGGAAAATTATCACTTTCATTTGAG

>Glyma04g12490.1   sequence type=CDS   gene model=Glyma04g12490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGATGCTGCTCAGGAAGGTGTGGGAAAGGGTGTTATGGAGATCTGATTCTTCAACGTCAGCATCAGCATCAGCATCATCTTCATCATCATCATCACCACCAGAAGTGGCATGTTCTGACATGGGCGAGTTGGAGCTGCTACCCAGTGACATCTTGATGCACATTCTGAGACTTTTGGGTCCAAAAGAGGCTGCAAAGTTGAGTGTGGTTTGCAAGGCTTTGAGATCCCTTGTGTCTGATAACAGACTTTGGATTCACTTTCTTCAGACCCATCAGGCTGAGCCCTCTGGGGATTCTGTCTTCTTTGCTGAGACCACCTTGAGCTATGGCTACCCTCTTCCGCCCTTTGCTGGCCATTGGCCCCAACTATCATTCAAGCATATTTATGGCCAGAGAGCACTGGTTCCTGGTTCTATTATCATCGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATACGCATATCCATCAGGGCGTTCAGCAACATTTTTGGAATTTGGTAATATTGAGTCACCAATGTATACTAGGCTTCGACATTTTTTTGCAACTATTTATAACAGGATGCAGGTGAAACCGAATAAACAACCAGTTATTGTTTCTGTGCCAATATGCCATTATGATGATACCGAATCAGCCAAAGCATCTAGGCAACAGCTTAAAGAGGCAATTTACGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGCGCCATCAACCAGGCCACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACGTCTATAGTTCCAATTTTAAACGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTGAAACTTACAGGATTTCTTAGGGAGAAGATGCAACTGAATAATTTAAGTTTTCAATCTTTGTACACTGTTCGCACATTGAAAGAGAATCTATGCTATGTTGCACTTGATTATGAAGCTGAGCTATTGAAAGATACAAAAGCATCATTTGAAGCTGCTGGAGAAGGATGGTTTACCCTTTCAAAAGGGAGGTTTCAGACAGCAGAGATCCTATTCCAGCCACATCTTGCCGGAGTGCAAGCTATGGGTCTGCACCAAGCCATAGCTCTTTGTGTGGAACATTGCCATTCTGCAGATTTAGCATGTGACAGTGATTGGTACAAGACTATAGTCTTATCAGGGGGGACTGCATGCTTACCTGGTTTGGCTGAAAGGATAGAGAAGGAACTCCATGCCTTACTTCCTCCCTACGTGTCCAATGGAATTAGAGTCATACCTCCTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAATGTGAGTCATACTACCTGTGATACATACTCAAATTTAGTTTGCTGTATATGCATTCTATTTTGGGTAGTGATTATGGCACCGTTGAGAATTATCCACTCAGTGTCCACTCCTCTCACACGGTTTATACACGTGTAA

>Glyma04g12490.2   sequence type=CDS   gene model=Glyma04g12490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGATGCTGCTCAGGAAGGTGTGGGAAAGGGTGTTATGGAGATCTGATTCTTCAACGTCAGCATCAGCATCAGCATCATCTTCATCATCATCATCACCACCAGAAGTGGCATGTTCTGACATGGGCGAGTTGGAGCTGCTACCCAGTGACATCTTGATGCACATTCTGAGACTTTTGGGTCCAAAAGAGGCTGCAAAGTTGAGTGTGGTTTGCAAGGCTTTGAGATCCCTTGTGTCTGATAACAGACTTTGGATTCACTTTCTTCAGACCCATCAGGCTGAGCCCTCTGGGGATTCTGTCTTCTTTGCTGAGACCACCTTGAGCTATGGCTACCCTCTTCCGCCCTTTGCTGGCCATTGGCCCCAACTATCATTCAAGCATATTTATGGCCAGAGAGCACTGGTTCCTGGTTCTATTATCATCGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATACGCATATCCATCAGGGCGTTCAGCAACATTTTTGGAATTTGGTAATATTGAGTCACCAATGTATACTAGGCTTCGACATTTTTTTGCAACTATTTATAACAGGATGCAGGTGAAACCGAATAAACAACCAGTTATTGTTTCTGTGCCAATATGCCATTATGATGATACCGAATCAGCCAAAGCATCTAGGCAACAGCTTAAAGAGGCAATTTACGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGCGCCATCAACCAGGCCACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACGTCTATAGTTCCAATTTTAAACGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTGAAACTTACAGGATTTCTTAGGGAGAAGATGCAACTGAATAATTTAAGTTTTCAATCTTTGTACACTGTTCGCACATTGAAAGAGAATCTATGCTATGTTGCACTTGATTATGAAGCTGAGCTATTGAAAGATACAAAAGCATCATTTGAAGCTGCTGGAGAAGGATGGTTTACCCTTTCAAAAGGGAGGTTTCAGACAGCAGAGATCCTATTCCAGCCACATCTTGCCGGAGTGCAAGCTATGGGTCTGCACCAAGCCATAGCTCTTTGTGTGGAACATTGCCATTCTGCAGATTTAGCATGTGACAGTGATTGGTACAAGACTATAGTCTTATCAGGGGGGACTGCATGCTTACCTGGTTTGGCTGAAAGGATAGAGAAGGAACTCCATGCCTTACTTCCTCCCTACGTGTCCAATGGAATTAGAGTCATACCTCCTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAATTTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTCCGTCAGAAGCCTAGACTCAACCTCATATGGTGA

>Glyma04g12490.1   sequence type=predicted peptide   gene model=Glyma04g12490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMLLRKVWERVLWRSDSSTSASASASSSSSSSPPEVACSDMGELELLPSDILMHILRLLGPKEAAKLSVVCKALRSLVSDNRLWIHFLQTHQAEPSGDSVFFAETTLSYGYPLPPFAGHWPQLSFKHIYGQRALVPGSIIIDGGSGYCKFGWSKYAYPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNKQPVIVSVPICHYDDTESAKASRQQLKEAIYASLFDMNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQLNNLSFQSLYTVRTLKENLCYVALDYEAELLKDTKASFEAAGEGWFTLSKGRFQTAEILFQPHLAGVQAMGLHQAIALCVEHCHSADLACDSDWYKTIVLSGGTACLPGLAERIEKELHALLPPYVSNGIRVIPPPYGADTPWFGAKIVGNVSHTTCDTYSNLVCCICILFWVVIMAPLRIIHSVSTPLTRFIHV*

>Glyma04g12490.2   sequence type=predicted peptide   gene model=Glyma04g12490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMLLRKVWERVLWRSDSSTSASASASSSSSSSPPEVACSDMGELELLPSDILMHILRLLGPKEAAKLSVVCKALRSLVSDNRLWIHFLQTHQAEPSGDSVFFAETTLSYGYPLPPFAGHWPQLSFKHIYGQRALVPGSIIIDGGSGYCKFGWSKYAYPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNKQPVIVSVPICHYDDTESAKASRQQLKEAIYASLFDMNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQLNNLSFQSLYTVRTLKENLCYVALDYEAELLKDTKASFEAAGEGWFTLSKGRFQTAEILFQPHLAGVQAMGLHQAIALCVEHCHSADLACDSDWYKTIVLSGGTACLPGLAERIEKELHALLPPYVSNGIRVIPPPYGADTPWFGAKIVGNLSTFPGHWCVTKKQFRQKPRLNLIW*







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