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Report for Sequence Feature Glyma04g37790

Feature Type:gene_model
Chromosome:Gm04
Start:44237606
stop:44246496
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g37790
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G13980AT Annotation by Michelle Graham. TAIR10: Glycosyl hydrolase family 38 protein | chr5:4508626-4514334 FORWARD LENGTH=1024 SoyBaseE_val: 0ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0006013GO-bp Annotation by Michelle Graham. GO Biological Process: mannose metabolic process SoyBaseN/AISS
GO:0007020GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule nucleation SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004553GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds SoyBaseN/AISS
GO:0004559GO-mf Annotation by Michelle Graham. GO Molecular Function: alpha-mannosidase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0015923GO-mf Annotation by Michelle Graham. GO Molecular Function: mannosidase activity SoyBaseN/AISS
GO:0030246GO-mf Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding SoyBaseN/AISS
KOG1959 KOG Glycosyl hydrolase, family 38 - alpha-mannosidase JGI ISS
PTHR11607Panther ALPHA-MANNOSIDASE JGI ISS
PTHR11607:SF3Panther LYSOSOMAL ALPHA-MANNOSIDASE (MANNOSIDASE ALPHA CLASS 2B MEMBER 1) JGI ISS
PF01074PFAM Glycosyl hydrolases family 38 N-terminal domain JGI ISS
PF07748PFAM Glycosyl hydrolases family 38 C-terminal domain JGI ISS
PF09261PFAM Alpha mannosidase, middle domain JGI ISS
UniRef100_G7J3A3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lysosomal alpha-mannosidase n=1 Tax=Medicago truncatula RepID=G7J3A3_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002339664UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339664 related cluster n=1 Tax=unknown RepID=UPI0002339664 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g37790
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g37790
ParalogEvidenceComments
Glyma06g17270 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g37790 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g200900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g37790
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g37790
>Glyma04g37790.1   sequence type=CDS   gene model=Glyma04g37790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAACACTGCTTTGTGTGTACTATGGTTTATACTACTCTTGTTGGGGTGTGTCATTTCCTCAGAATCTAAGTATATAAGGTACAACACAACATCGACCATTGTTCCTGGGAAACTCAACGTTCACTTGGTCCCTCACACTCACGATGATGTTGGATGGTTGAAGACCATTGACCAGTACTATGTTGGTTCCAACAACTCAATTCAGGGGGCGTGCGTTCAAAACGTGCTCGATTCCCTGGTACCTGCATTGCTGGCAGACAAGAATCGCAAGTTCATATATGTTGAGCAGGCATTTTTCCAGCGATGGTGGAGGGAACAAAGTGATGCTGTCCAGAACATAGTCAAGGAACTGGTCAACACTGGTCAATTGGAGTTCATAAATGGTGGTTTTTGTATGCATGATGAGGCTGCTACCCATTACATTGACATGATTGATCAGACAACTCTTGGACATCAATTTATCAAAGAAGAATTTGGAGTGACTCCGAGAATAGGGTGGCAGATTGATCCGTTTGGACATTCTGCTGTGCAGGCCTACTTGTTGGGGGCAGAGGTTGGATTTGACTCTCTATTCTTTGCACGGATTGATTACCAAGACAGAGCTAAGAGAAAAGATGAAAAAACTCTTGAAGTTGTGTGGCGGGGCTCCAAGAGCCTTGGTTCATCAGCACAGATATTTTCTGGTGCGTTCCCTGAGAATTATGAACCTCCCAGTAATTTCTACTATGAAGTAAATGACGATTCTCCCATTGTTCAGGATGATGTCAGTTTATTTGATTACAATGTCCCTGAAAGAGTAAATGAGTTTGTGGCAGCTGCAATATCACAGGCCAATATTACGCGCACAAATCATATAATGTGGACAATGGGGACAGATTTCAAGTACCAATATGCACAAACCTGGTTTCGGCAATTGGACAAGTTTATTCACTATGTTAATCAAGATGGCCGTGTTCATGCCTTATACTCGACTCCATCAATATATACTGATGCAAAACATGCTGCCAATGAGGCCTGGCCAATAAAGACCGATGACTTCTTTCCGTATGCAGATCGTGTAAATGCCTACTGGACTGGGTATTTTACAAGCAGGCCAGCAATCAAAGGTTATGTCAGATTGATGAGTGGCTACTACTTGGCAGCGAGGCAGTTGGAATATTTTAAAGGGAAGAGTGCCTTAGGTCCCAACACTGACTCTTTGGCTGAAGCTTTGGCTATTGCTCAACACCATGACGCAGTATCTGGTACAGAAAAGCAGCATGTTGCTAATGATTATGCTAAACGACTTTCAATAGGTTACACAGAGGCTGAGAAAGTTGTTGCAGTATCACTTGCTTGCTTGACAGAGGGAGCAACCAAAACAGGTTGTAAGAACCCACAGACTAAATTTCAACAGTGTCCACTTCTGAACATAAGTTACTGTCCTGCATCAGAAGTTGATTCCTCAAATGGGAAAAACTTGGTAATTGTTGTTTACAATCCTCTAGGATGGAAAAGAGAGGATATCATAAGGATTCCTGTTGTCAATGAAAATGTTGTTCGGGATTCTAGTGGGAAAAAGATCCAATCCCAGCTGGTGCCGATACTTGATGATTTTCTTGGTTTAAGAAACTACCACACTGTGGCATACTTGGGAGTGTCTCCAACTGTAAAACCCAAATACTGGCTTGCTTTTTCAGCAGCTGTTCCTCCACTCGGTTTTAGCACTTACTATGTATCCTATGCCAAAAAAGAAGCTACTATTTCAGATAGAGATACAGCTTACCAATCATGGAATAAGAGTGATACAATTACAGTGGGCCTAAAAAACTTGAAACTAGTTTATTCTGTGAAGGAAGGGAAACTTACTAAATATATCAACAGCAGAAGCAAGGTCAAAGAACCTCTAGAGCAGGCATATAAATTTTACACTGGGTATGGAAATGATGGAACAGAAACTGCTCAGGCTTCTGGAGCATATATTTTTCGCCCTGATGGTTCACCTTCTCCCATCAAATCCAACGGGAAGTCTCCTCTCACAGTTTTTCGGGGACCAATTGTGCATGAAGTGCATCAGAAGATCAGTCCATGGATATACCAGACTACTAGACTGTACAAGGGGAAAGAACATGCTGAAGTTGAATTCATTGTTGGACCTATACCCATTGATGATGGAGATGGCAAAGAAATCGCAACTGAAATCAAAACAAATCTAGCAAGCAACAAAACCTTCTATACTGATTCCAATGGACGTGATTTCATTGAACGTGTTCGAGACTATAGAAAAGACTGGCACTTGGAAGTAAATCAACCTGTAGCTGGAAATTATTACCCTATCAACCTTGGGATTTACCTGAAAGATAAAAGCAAAGAGTTTTCTATATTGGTAGATAGAGCTGTGGGGGGCTCCAGCATCATAGATGGGCAATTGGAGCTAATGGTTCATAGGAGGTTACTTCAGGATGATTCCCGAGGTGTTGCAGAGGCACTGAATGAAACAGTTTGCATCCATGATAAGTGCACCGGGTTAACTGTGCTAGGGAAGTACTATTTCAGAATTGATCCTGTAGGAGAGGGTGCCAGATGGCGTCGATCATTTGGTCAGGAGATATACTCACCCTTGCTTTTAGCCTTCACAGAGAGTGAAGGTCACTGGGGAGATTCTCATGTCACAACCTTCTCAGGAATAGATTCCTCATACAACTTACCAGATAACGTTGCCATAGTAACTCTCCAGGATCTGGGTGATGGAAAAGTTCTCCTTCGGCTGGCACACTTATACGAGATTGACGAGGACAAGTATCTTTCGGTTAAGGCAACTGTAGAACTTAAAAAGGTGTTTCCCAACAAGCAGATAAACAAAATAACTGAAGTGAGCTTATCAGCAAACCAAGAAAGAGATGAAATGGAGAGGAAGAGATTGGTTTGGCAAGTTAAAGGGTCACCTCCAGAACCTAAGGTGTGGAGGGGAGGACCGGTAGATCCAGAAAATCTAATTGTAGAACTTGCTCCAATGGAAATAAGGACTTTTATTATCAGTTTTAGGCATTAA
Predicted protein sequences of Glyma04g37790
>Glyma04g37790.1   sequence type=predicted peptide   gene model=Glyma04g37790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENTALCVLWFILLLLGCVISSESKYIRYNTTSTIVPGKLNVHLVPHTHDDVGWLKTIDQYYVGSNNSIQGACVQNVLDSLVPALLADKNRKFIYVEQAFFQRWWREQSDAVQNIVKELVNTGQLEFINGGFCMHDEAATHYIDMIDQTTLGHQFIKEEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFARIDYQDRAKRKDEKTLEVVWRGSKSLGSSAQIFSGAFPENYEPPSNFYYEVNDDSPIVQDDVSLFDYNVPERVNEFVAAAISQANITRTNHIMWTMGTDFKYQYAQTWFRQLDKFIHYVNQDGRVHALYSTPSIYTDAKHAANEAWPIKTDDFFPYADRVNAYWTGYFTSRPAIKGYVRLMSGYYLAARQLEYFKGKSALGPNTDSLAEALAIAQHHDAVSGTEKQHVANDYAKRLSIGYTEAEKVVAVSLACLTEGATKTGCKNPQTKFQQCPLLNISYCPASEVDSSNGKNLVIVVYNPLGWKREDIIRIPVVNENVVRDSSGKKIQSQLVPILDDFLGLRNYHTVAYLGVSPTVKPKYWLAFSAAVPPLGFSTYYVSYAKKEATISDRDTAYQSWNKSDTITVGLKNLKLVYSVKEGKLTKYINSRSKVKEPLEQAYKFYTGYGNDGTETAQASGAYIFRPDGSPSPIKSNGKSPLTVFRGPIVHEVHQKISPWIYQTTRLYKGKEHAEVEFIVGPIPIDDGDGKEIATEIKTNLASNKTFYTDSNGRDFIERVRDYRKDWHLEVNQPVAGNYYPINLGIYLKDKSKEFSILVDRAVGGSSIIDGQLELMVHRRLLQDDSRGVAEALNETVCIHDKCTGLTVLGKYYFRIDPVGEGARWRRSFGQEIYSPLLLAFTESEGHWGDSHVTTFSGIDSSYNLPDNVAIVTLQDLGDGKVLLRLAHLYEIDEDKYLSVKATVELKKVFPNKQINKITEVSLSANQERDEMERKRLVWQVKGSPPEPKVWRGGPVDPENLIVELAPMEIRTFIISFRH*






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