Report for Sequence Feature Glyma05g08200
Feature Type: gene_model
Chromosome: Gm05
Start: 8166830
stop: 8173357
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g08200
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G15610 AT
Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr3:5291076-5292796 REVERSE LENGTH=341
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0080008 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
KOG0278
KOG
Serine/threonine kinase receptor-associated protein
JGI ISS
PTHR19877 Panther
WD40 REPEAT PROTEIN
JGI ISS
PF00400 PFAM
WD domain, G-beta repeat
JGI ISS
UniRef100_B9STP9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Serine-threonine kinase receptor-associated protein, putative n=1 Tax=Ricinus communis RepID=B9STP9_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1K1C9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K1C9_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g08200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma05g08200
Paralog Evidence Comments
Glyma17g12770 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g08200 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g010900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g08200
Coding sequences of Glyma05g08200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g08200.1 sequence type=CDS gene model=Glyma05g08200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAAAGAAAAAGGTGGCAGTTCCCCTCGTGTGCCACGGTCATTCTCGCCCTGTGGTTGATCTCTTCTACAGTCCCGTTACGCCTGATGGGTTTTTCCTCATCAGTGCCAGCAAGGATTCGAGTCCTATGCTCAGAAATGGAGAGACTGGAGATTGGATTGGAACATTTGAAGGGCACAAAGGTGCTGTGTGGAGTTGCTGCTTGGATACCAGTGCCTTACGTGCCGCAACTGCTTCTGCTGATTTCTCAACGAAAGTTTGGGATGCTTTAACAGGAGATGAATTGCACTCTTTTGAGCATAAGCACATTGTTCGAGCATGTGCTTTTTCTGAGGATACTCACCTTTTGCTCACTGGGGGAGTTGAGAAAATTCTCCGGATCTATGATATGAATAGGCCTGATGCGCCACCCAGAGAAGTGGATAAGTCCCCTGGTTCTGTCAGAACTGTTGCCTGGCTTCATAGTGACCAGACAATATTGAGTTCATGTACTGATATGGGAGGTGTCAGGTTATGGGATGTAAGAAGTGGTAAAATAGTCCAGACACTTGAAACTAAGTCATCTGTGACAAGTGCTGAAGTGAGTCAGGATGGCCGTTATATAACCACTGCTGATGGTTCTACTGTAAAGTTTTGGGATGCGAACTACTATGGATTGGTGAAGAGCTATGATATGCCCTGCACTGTGGAATCAGTTTCACTGGAGCCTAAGTATGGGAACAAGTTCGTTGCCGGCGGAGAAGATATGTGGGTTCGTGTGTTTGATTTCCATACAGGGAATGAGATTGCATGCAACAAGGGGCACCACGGTCCTGTCCACTGTGTTCGTTTTTCTCCTGGTGGAGAATCCTATGCCTCAGGATCTGAGGATGGAACCATCAGAATATGGCAGACTGGCCCCTTGACCCTCGATGACTCAGAGACTGTGTCTGCAAATGGTTCAGTTGATAAGGTGAAGGAAACTGCAGATGAGGTTTCACGCAAGATTGAGGGTTTTCAAATTGCAGATGAGGGGAAATCTAAAGAAAAGGATGAGGCTGTGGAGGAATCAAGCTAA
Predicted protein sequences of Glyma05g08200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g08200.1 sequence type=predicted peptide gene model=Glyma05g08200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTSALRAATASADFSTKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGVEKILRIYDMNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKIVQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANYYGLVKSYDMPCTVESVSLEPKYGNKFVAGGEDMWVRVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTLDDSETVSANGSVDKVKETADEVSRKIEGFQIADEGKSKEKDEAVEESS*