Report for Sequence Feature Glyma06g01570
Feature Type: gene_model
Chromosome: Gm06
Start: 992266
stop: 994015
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g01570
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G49320 AT
Annotation by Michelle Graham. TAIR10: unknown seed protein like 1 | chr1:18246441-18247817 FORWARD LENGTH=280
SoyBase E_val: 1.00E-66 ISS
GO:0048316 GO-bp
Annotation by Michelle Graham. GO Biological Process: seed development
SoyBase N/A ISS
GO:0000326 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: protein storage vacuole
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF03181 PFAM
BURP domain
JGI ISS
UniRef100_G7J6J1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: BURP domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J6J1_MEDTR
SoyBase E_val: 2.00E-149 ISS
UniRef100_UPI0002339D1A UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002339D1A related cluster n=1 Tax=unknown RepID=UPI0002339D1A
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g01570
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma06g01570
Paralog Evidence Comments
Glyma04g01500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g01570 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g013400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g01570
Coding sequences of Glyma06g01570
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g01570.2 sequence type=CDS gene model=Glyma06g01570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGACTTGGATTTGCTTCTTGGAGATTCATCCCATGCACCCTGGTTGCCTTTTTGATTCTACAAGACAGTGGAGCTAGAAAGATAGCTACAACATCTGGGAAAGAAATTCAACTGAAGGAAGAAGTATCCTATGATTTGCAAAAGCTTGCAACAGAGGGTCTTGTACTTGACAGTATTATTCAGCTCGAAGGCGCTGATATAGAAAAGAAGAAGCATGTCCATAAAGATGATGATGAGGACGAGGACGATAGAGTGAAGAAAGGAATGGGATTTGACAAAGAAGAAGATGAGGAGGAGGATAAAGATGAACACAAAAAGATGGTTGGAAAGGATGTGCATGGTTATAAGCCATCTCACAAACACATGGACCTTGAACTGAATGTGTTCTTCACCCCAAATGATTTAAAGGTTGGGAAAATAATGCCCGTCTATTTTTCCAAGAAAAACTCCTCAACATCTCCAAAATTTCTGACCAGAGAAGAAGCTGACCAGATTCCTTTCTCATGCAAACACCTACCATCCCTTCTCAAATTCTTCTCCATCCCACAACACTCTCCCCAAGCCAAGGCAATGAAATATACCCTCAAACAATGTGAATTTGAACCCATGGAAGGAGAGACCAAGTTCTGTGCCACTTCGTTGGAGTCCTTGTTTGATTTTGCGCACTATCTGTTTGGGTCCAATGCACAATTCAAAGTTCTGACCACTGTCCATCTCACAAATTCAACAGCCCTGCTACAGAACTACACAATCTCAGAAGTGAAAGTGATTTCAGTTCCAAATGTTATAGGGTGTCACCCCATGCCTTACCCTTATGCAGTTTTTTACTGCCACAGTCAGCATAGTGACACCAATCTCTATGAGGTGATGGTAGAAGGTGAGAATGGAGGGAGAGTTCAAGCTGCAGCTATTTGCCACATGGACACCTCTAAGTGGGACCGGGACCACGTGTCCTTTCGTGTGCTCAAAGTTCAGCCGGGAACCTCACCTGTGTGTCACTTCTTCCCTCCTGATAATCTAGTCTGGGTGCCTTTGCCTCTGCCTCCATAA
Predicted protein sequences of Glyma06g01570
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g01570.2 sequence type=predicted peptide gene model=Glyma06g01570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRLGFASWRFIPCTLVAFLILQDSGARKIATTSGKEIQLKEEVSYDLQKLATEGLVLDSIIQLEGADIEKKKHVHKDDDEDEDDRVKKGMGFDKEEDEEEDKDEHKKMVGKDVHGYKPSHKHMDLELNVFFTPNDLKVGKIMPVYFSKKNSSTSPKFLTREEADQIPFSCKHLPSLLKFFSIPQHSPQAKAMKYTLKQCEFEPMEGETKFCATSLESLFDFAHYLFGSNAQFKVLTTVHLTNSTALLQNYTISEVKVISVPNVIGCHPMPYPYAVFYCHSQHSDTNLYEVMVEGENGGRVQAAAICHMDTSKWDRDHVSFRVLKVQPGTSPVCHFFPPDNLVWVPLPLPP*