Glyma06g13690 - SoyBase

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Report for Sequence Feature Glyma06g13690

Feature Type:	gene_model
Chromosome:	Gm06
Start:	10821722
stop:	10826820
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g13690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G21320	AT	Annotation by Michelle Graham. TAIR10: nucleotide binding;nucleic acid binding \| chr1:7462834-7466164 REVERSE LENGTH=253	SoyBase	E_val: 1.00E-50	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
PTHR24011	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24011:SF180	Panther		JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7J7H7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding protein with multiple splicing n=1 Tax=Medicago truncatula RepID=G7J7H7_MEDTR	SoyBase	E_val: 2.00E-123	ISS
UniRef100_I1KAV9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAV9_SOYBN	SoyBase	E_val: 9.00E-167	ISS

Expression Patterns of Glyma06g13690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g13690

Paralog	Evidence	Comments
Glyma04g41150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g13690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g131700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g13690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g13690

Limit To All Plant Sequences

>Glyma06g13690.3   sequence type=transcript   gene model=Glyma06g13690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGGGCATGCATAACATAACATAACCGCGTAAGGTGTAGACGGAGACAAAATTGAAAATCCAGATTAGTTGAGCGGAGAGAGACTTTGAAGTTGTGTCGTGTGGCGTTTCTGGCTGCAATCACAGTCTCTTCCACTTTTCAATTTCATTCTTTAATCAGTCAATCGGCATCCTCATGTCCGACGCTTATTGGAGATACGCCGCCGAGTCCCGGCAGGCCCCCTCTTCCATCGCCGGCAAGCGCTCTCGTTCCGACTACGATGTTTCTGGCGTTCATGACTTGCCCAGTTACTTTCCCCATGACGATGATAGAGGAGGGCTCCGAGTAATTAGAGATACTGAATCCCTTGATGCATCTTATGAGCGTTACCTCCGTAGTGCGCAAGTTTCATCATATGGTTCGGGACAGTCTACTAGAACCATTGGTGGGCGAATTCCCAATCGTGCTATTGATGATTCACATGTTGCCAATATTGGGGGAGTCGACAGGGGAACAAATGCAAAAGACAAAATGCCGGGATTAAGTAGTGGAAGGGCTGACCATTCTCTTCCACCAGATGCTACCAGTACACTGTTTGTGGAGGGTTTGCCTTCCAACTGTACAAGACGGGAAGTAGCTCATATTTTTCGTCCTTTTGTTGGCTACAAAGAAGTCAGACTTGTCAGCAAGGAATCAAGACAACCAGGGGGTGATCCACTGGTACTTTGTTTTGTCGATTTTATGAGTCCAGCTCATGCAGCAACTGCCATGGAAGCATTGCAGGGTTACAAATTTGATGAGCTTGACCGCAACTCGGTCAACTTAAGGTTTCAATTTGCTCGCTATCCTGGTGCGAGGTCAGGTGGCGTGCATCGTGGCAAACGTTGAATTATGCAATCTACAGGTGATTAATGCTATTATTTCAATACGCTCACGCTGTTATTAATGGTCGTTGGGTGCTGAATAAAAAGCTTCAATATAAACGGTTGATCGTGCTGAATCGTGAAACGATAATTCCATGTAGGATTCACTCACGTTGGGGAGGTTATGATTTTGAGAGGCAAGTGACCAGCGTCGCAGTCATTAGGACCAAGTCGAACATTGTGGTATTCGTGTGGGGAGTGCTCGCTAGAGATTCAGATTCTGCCTGTTTGAGAAAATTGTCTAATTTATTTAGTATAAATTCAAATTGTCTTGTTCGAAACAACGTATGTCTTTGAAGGTGTTCACTGCTCTTTCGAATATATCCAATATTTAATACTGAGAAGCATGTTCTCCATGCATGTTTCTACTTTCTAGTGAGCCTTTTAGATATCAAATATCGTTAATTGTTGATTTTATTAGATTACTATAATTAGACAAATATCGGTGCACTCACTCTAGAATTTTTTGCCCTCAATACATATTTTTCTGCTTAATATGAGTTTTTTAGTTTATAGTTTTACTACGAAAGTTAGTATATTTAATTTTCTAATTAATTTCTCTCATTTTACAACGAATTTTAGCCATTTGTCAAAGCATCCTCCTCATATTATAGTATATGCATATGATTATTTGGTGGGTTGCGTTTCTGGAATATGAAGTATCAGAAAAGTAATTAGCCCCAATCTTTGATTATAATCCTGATAGTAATGACCTGCTAATCAAAGCAGATTAGCAATATAATAACACGGTCTGAACGGTGTTAGTTATTACATATATTTTATTTATTCAGTGAGCGTCCAGAAATTATAATACTGTCAATTTGAAGTGGATGATAAGATTTTGACTGATGTTGCCGTATGTGAAGGCATTGCTCTTTGAATTTACTCGTTTTTGGTTTAAGTCATTAATCTGGGTAGATGTAACTTGCCCTAAAGCAACTGTTCATATTCATCCCTGCCTAAAGCTTTTCCATCAATGATACCA

Coding sequences of Glyma06g13690

Limit To All Plant Sequences

>Glyma06g13690.1   sequence type=CDS   gene model=Glyma06g13690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGACGCTTATTGGAGATACGCCGCCGAGTCCCGGCAGGCCCCCTCTTCCATCGCCGGCAAGCGCTCTCGTTCCGACTACGATGTTTCTGGCGTTCATGACTTGCCCAGTTACTTTCCCCATGACGATGATAGAGGAGGGCTCCGAGTAATTAGAGATACTGAATCCCTTGATGCATCTTATGAGCGTTACCTCCGTAGTGCGCAAGTTTCATCATATGGTTCGGGACAGTCTACTAGAACCATTGGTGGGCGAATTCCCAATCGTGCTATTGATGATTCACATGTTGCCAATATTGGGGGAGTCGACAGGGGAACAAATGCAAAAGACAAAATGCCGGGATTAAGTAGTGGAAGGGCTGACCATTCTCTTCCACCAGATGCTACCAGTACACTGTTTGTGGAGGGTTTGCCTTCCAACTGTACAAGACGGGAAGTAGCTCATATTTTTCGTCCTTTTGTTGGCTACAAAGAAGTCAGACTTGTCAGCAAGGAATCAAGACAACCAGGGGGTGATCCACTGGTACTTTGTTTTGTCGATTTTATGAGTCCAGCTCATGCAGCAACTGCCATGGAAGCATTGCAGGGTTACAAATTTGATGAGCTTGACCGCAACTCGGTCAACTTAAGGTTTCAATTTGCTCGCTATCCTGGTGCGAGGTCAGGTGGCGTGCATCGTGGCAAACGTTGA

>Glyma06g13690.3   sequence type=CDS   gene model=Glyma06g13690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGACGCTTATTGGAGATACGCCGCCGAGTCCCGGCAGGCCCCCTCTTCCATCGCCGGCAAGCGCTCTCGTTCCGACTACGATGTTTCTGGCGTTCATGACTTGCCCAGTTACTTTCCCCATGACGATGATAGAGGAGGGCTCCGAGTAATTAGAGATACTGAATCCCTTGATGCATCTTATGAGCGTTACCTCCGTAGTGCGCAAGTTTCATCATATGGTTCGGGACAGTCTACTAGAACCATTGGTGGGCGAATTCCCAATCGTGCTATTGATGATTCACATGTTGCCAATATTGGGGGAGTCGACAGGGGAACAAATGCAAAAGACAAAATGCCGGGATTAAGTAGTGGAAGGGCTGACCATTCTCTTCCACCAGATGCTACCAGTACACTGTTTGTGGAGGGTTTGCCTTCCAACTGTACAAGACGGGAAGTAGCTCATATTTTTCGTCCTTTTGTTGGCTACAAAGAAGTCAGACTTGTCAGCAAGGAATCAAGACAACCAGGGGGTGATCCACTGGTACTTTGTTTTGTCGATTTTATGAGTCCAGCTCATGCAGCAACTGCCATGGAAGCATTGCAGGGTTACAAATTTGATGAGCTTGACCGCAACTCGGTCAACTTAAGGTTTCAATTTGCTCGCTATCCTGGTGCGAGGTCAGGTGGCGTGCATCGTGGCAAACGTTGA

Predicted protein sequences of Glyma06g13690

Limit To All Plant Sequences

>Glyma06g13690.1   sequence type=predicted peptide   gene model=Glyma06g13690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDAYWRYAAESRQAPSSIAGKRSRSDYDVSGVHDLPSYFPHDDDRGGLRVIRDTESLDASYERYLRSAQVSSYGSGQSTRTIGGRIPNRAIDDSHVANIGGVDRGTNAKDKMPGLSSGRADHSLPPDATSTLFVEGLPSNCTRREVAHIFRPFVGYKEVRLVSKESRQPGGDPLVLCFVDFMSPAHAATAMEALQGYKFDELDRNSVNLRFQFARYPGARSGGVHRGKR*

>Glyma06g13690.3   sequence type=predicted peptide   gene model=Glyma06g13690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDAYWRYAAESRQAPSSIAGKRSRSDYDVSGVHDLPSYFPHDDDRGGLRVIRDTESLDASYERYLRSAQVSSYGSGQSTRTIGGRIPNRAIDDSHVANIGGVDRGTNAKDKMPGLSSGRADHSLPPDATSTLFVEGLPSNCTRREVAHIFRPFVGYKEVRLVSKESRQPGGDPLVLCFVDFMSPAHAATAMEALQGYKFDELDRNSVNLRFQFARYPGARSGGVHRGKR*

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