Glyma06g16810 - SoyBase

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Report for Sequence Feature Glyma06g16810

Feature Type:	gene_model
Chromosome:	Gm06
Start:	13210946
stop:	13211818
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g16810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G63660	AT	Annotation by Michelle Graham. TAIR10: Scorpion toxin-like knottin superfamily protein \| chr5:25485692-25486062 FORWARD LENGTH=73	SoyBase	E_val: 3.00E-25	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
PF00304	PFAM	Gamma-thionin family	JGI		ISS
UniRef100_B9RHP2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 8.4 kDa sulfur-rich protein, putative n=1 Tax=Ricinus communis RepID=B9RHP2_RICCO	SoyBase	E_val: 1.00E-22	ISS
UniRef100_C6TFR9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TFR9_SOYBN	SoyBase	E_val: 4.00E-44	ISS

Expression Patterns of Glyma06g16810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g16810

Paralog	Evidence	Comments
Glyma04g38251	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g16810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g160400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g16810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g16810

Limit To All Plant Sequences

>Glyma06g16810.1   sequence type=CDS   gene model=Glyma06g16810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAAGGCACGATTTGGGTTTTTCTTCATGTTGCTCATTCTCCTTTCTTCTCAGATGGTGGTACAAACAGAGGGAAGGCACTGTGAGTCAAAGAGCCATCGGTTTAAAGGGATGTGCCTCAGTAAGCACAACTGCGCTTCGGTTTGCCATCTTGAAGGCTTCACGGGTGGCAAGTGTCGTGGATTTCGTAGACGCTGTTTCTGCACCAGGCACTGTTAG

Predicted protein sequences of Glyma06g16810

Limit To All Plant Sequences

>Glyma06g16810.1   sequence type=predicted peptide   gene model=Glyma06g16810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKARFGFFFMLLILLSSQMVVQTEGRHCESKSHRFKGMCLSKHNCASVCHLEGFTGGKCRGFRRRCFCTRHC*

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