Report for Sequence Feature Glyma06g18420
Feature Type: gene_model
Chromosome: Gm06
Start: 14774266
stop: 14776551
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g18420
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G31880 AT
Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein | chr2:13554920-13556845 FORWARD LENGTH=641
SoyBase E_val: 0 ISS
GO:0006468 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein phosphorylation
SoyBase N/A ISS
GO:0007169 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway
SoyBase N/A ISS
GO:0010942 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of cell death
SoyBase N/A ISS
GO:0031349 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of defense response
SoyBase N/A ISS
GO:0060862 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of floral organ abscission
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0004672 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein kinase activity
SoyBase N/A ISS
GO:0004674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity
SoyBase N/A ISS
GO:0004713 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016301 GO-mf
Annotation by Michelle Graham. GO Molecular Function: kinase activity
SoyBase N/A ISS
GO:0016772 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups
SoyBase N/A ISS
KOG1187
KOG
Serine/threonine protein kinase
JGI ISS
PTHR24420 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24420:SF83 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00069 PFAM
Protein kinase domain
JGI ISS
PF00560 PFAM
Leucine Rich Repeat
JGI ISS
UniRef100_B9RAQ8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, putative n=1 Tax=Ricinus communis RepID=B9RAQ8_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1KC90 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KC90_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g18420
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma06g18420
Paralog Evidence Comments
Glyma04g36450 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g18420 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g175100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g18420
Coding sequences of Glyma06g18420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g18420.1 sequence type=CDS gene model=Glyma06g18420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGGGAAAACTCAAACTCACTACTTTCTTCTCTTGTTTCTCTTCTTAATCTCCATCAACGCCAAACTTGATCTCTACCCTTCAGACTACAAGGCACTCCTAACTCTGCAGAAGGACCTCGGAGTCAACGGTCAAGTCTCCGCAACTCTGGCTTGCGAAACAGAGGGCGTGTTCTGCGAGCGGAGGAAGCTCTCCGGCAAGGAAACCTACGCCCTCCGAATCACCAGACTCGTCTTCAAATCCAACAACCTCAACGGTGTTCTGTCCCCTTCCATTGGACGCCTCACGGAGCTCAAAGAACTCTCTCTCTCCGACAACAACCTCTTTGGCCGACTCCCTCCCCAAATCTTTGACTGCAGAAAGCTCCAAATCCTCGACCTCGCCAACAACCTCTTCTCCGGCCCAGTCCCCCCAGAGCTCTCCTCCCTCACGCGCCTCCGCGTGCTGGACATCTCCACCAACAGGCTCTCCGGCAACCTCAATTTCCTCAAATACTTTCCCAATTTGGAAACTCTCTCCGTCGCCGACAACCTCTTCACCGGAAGAGTCCCTCCCTCCGTCCGCTCCTTCCGTAACCTCCGCCAATTCAACTTCTCCGGTAACCGCTTCCTCGAGCCCTCTCTACAATCATCCTCACCAGAAACAATTCTCTCCAGACGTTTTCTGTTAGACGGCGACGGTGATGTTCCTGCTCCTGCTCCTGCACCTGCACCTAATAACTCAAACAAGAAGAAAAAATCCAATGCTTCTTCTGGTGCTGCTGCTGCACCAGGTCCCGCACCGAACAACCACAAGCACAAGAAAAGTAGGAGAAAACTCTTAGGGTGGATTCTGGGGTTTGTGGCAGGGGCAGTGGCGGGAATCTTAGCAGGATTCGTGTTTTCTCTAATGTTCAAGCTGGCTCTGGCGTTGATAAAAGGAAGAGGAAGGAAAGCGGGGCCTGATATCTACAGTCCATTGATAAAGAAAGCAGAGGATTTGGCCTTCTTGGAGAAAGAAGAAGGAATGGCATCGTTGGAAATCATCGGGCGAGGTGGCTGCGGAGAGGTTTACAAGGCCGAGTTACCGGGAAGCAACGGGAAAATGATCGCTATAAAGAAAATAATTCAGCCTCCCAAAGAGGGTGCTGAGTTAGCAGAAGAGGACAGCAAGGTTCTGAACAAGAAAATGAGGCAAATTCGATCTGAGATCACTACAGTGGGACAAATCAGGCACCGAAACCTTCTTCCTTTGCTGGCCCACGTGTCTAGGCCGGGATGCCACTACCTTGTTTACGAGTTCATGAAGAATGGCAGCTTGCATGACACCCTGAGCAAGGTTGAGGTGGGCGAGTTCGAGTTGGATTGGTTGTCAAGGCACAAGATCGCTCTCGGTGTGGCCGCTGGACTCGAATACCTTCACTTGAATCACAACCCTCGGATCATTCATAGGGATCTCAAGCCTGCTAACATTCTTCTTGATGATGACATGGAGGCCCGAATTGCTGATTTCGGCCTCGCCAAGGCCATGCCTGATTACAAGACTCACATTACAACCTCCAATGTGGCTGGAACTGTGGGCTATATTGCTCCTGAGTATCATCAGATACTCAAGTTCACTGATAAGTGTGATATTTACAGCTTTGGCGTCATACTTGGGGTGTTGGTCATTGGGAAGCTTCCTTCTCATGAGTTTTTTCAGCACACTGAAGAGATGAGTTTGGTCAAGTGGATGAGGAAGATTTTGAGTTCCGAGAATCCCAAGGAGGCTATTGATACAAAGCTGCTGGGGAATGGGTATGAGGACCAGATGCTTCTTGTTTTGAAGATTGCATGCTTTTGCACTATGGATGATCCAAAGGAAAGGCCTAACAGTAAGGATGTTTGGTGCATGCTGTCACAGATTAAGCACTGA
Predicted protein sequences of Glyma06g18420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g18420.1 sequence type=predicted peptide gene model=Glyma06g18420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAGKTQTHYFLLLFLFLISINAKLDLYPSDYKALLTLQKDLGVNGQVSATLACETEGVFCERRKLSGKETYALRITRLVFKSNNLNGVLSPSIGRLTELKELSLSDNNLFGRLPPQIFDCRKLQILDLANNLFSGPVPPELSSLTRLRVLDISTNRLSGNLNFLKYFPNLETLSVADNLFTGRVPPSVRSFRNLRQFNFSGNRFLEPSLQSSSPETILSRRFLLDGDGDVPAPAPAPAPNNSNKKKKSNASSGAAAAPGPAPNNHKHKKSRRKLLGWILGFVAGAVAGILAGFVFSLMFKLALALIKGRGRKAGPDIYSPLIKKAEDLAFLEKEEGMASLEIIGRGGCGEVYKAELPGSNGKMIAIKKIIQPPKEGAELAEEDSKVLNKKMRQIRSEITTVGQIRHRNLLPLLAHVSRPGCHYLVYEFMKNGSLHDTLSKVEVGEFELDWLSRHKIALGVAAGLEYLHLNHNPRIIHRDLKPANILLDDDMEARIADFGLAKAMPDYKTHITTSNVAGTVGYIAPEYHQILKFTDKCDIYSFGVILGVLVIGKLPSHEFFQHTEEMSLVKWMRKILSSENPKEAIDTKLLGNGYEDQMLLVLKIACFCTMDDPKERPNSKDVWCMLSQIKH*