Glyma07g15820 - SoyBase

SoyBase NEW SoyBase for review!
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma07g15820

Feature Type:	gene_model
Chromosome:	Gm07
Start:	15515118
stop:	15524637
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g15820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09370	AT	Annotation by Michelle Graham. TAIR10: myb domain protein 3r-3 \| chr3:2879534-2882128 FORWARD LENGTH=510	SoyBase	E_val: 4.00E-156	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG0048	KOG	Transcription factor, Myb superfamily	JGI		ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_Q2LMF2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB4 n=1 Tax=Malus x domestica RepID=Q2LMF2_MALDO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E110	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E110 related cluster n=1 Tax=unknown RepID=UPI000233E110	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g15820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g15820

Paralog	Evidence	Comments
Glyma18g39740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g15820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g132200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g15820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g15820

Limit To All Plant Sequences

>Glyma07g15820.4   sequence type=CDS   gene model=Glyma07g15820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGGTGGTGAAATCAGAGGAGTGTTGTCAGGAGAATAAGCAATCTACTGCTGCTTCTTGCTCCTCTGTATCCGAAGGCAGTGGCAGTGCAATTCACAAGTCTCCGGGGAGATGTAGCCCTGCATCCACATCGCCCTCACATCGGAGGACCACCGGCCCTATAAGGCGTGCTAAGGGCGGTTGGACTGCACAAGAAGATGAGACATTAAGGAATGCTGTTGCAGTTTTTAAGGGAAAGAGTTGGAAGAAAATAGCTGAGTTTTTTCCTGATAGATCAGAAGTTCAGTGTCTGCACAGATGGCAAAAAGTTCTTAATCCAGAACTTGTTAAAGGACCTTGGACACAGGAGGAGGATGATAAAATTGTTGAACTGGTGTCAAAATATGGGCCTACAAAATGGTCTTTGATAGCCAAGTCTTTACCTGGTCGAATAGGCAAACAATGTCGAGAGCGGTGGCACAATCATCTTAATCCTGACATAAAGAAGGATGCCTGGACTTTGGAAGAGGAATTGGCCCTGATGAATGCTCATCGTATACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTTCATGGAAGGACTGATAATGCAATAAAGAATCACTGGAATAGTTCTTTGAAGAAAAAGTTGGATTTTTATTTAGCTACAGGAAGACTTCCACCAATTCCTAAGAATAGTCCACAAGTTCCTGTCAAAGATACAATTAGACGTTCTGCTAGTAAATCAATGCTTGGTTGTTCAAATAAAGAATTAAATGCAGCTGTTGAAACATCATCTGAAACTACAGCCATTAGTAAGCTAGATGACAGTGGCAGGAATCAGTTTGAGTCCTCAGGCACAGTTAGAGAAGTTGGTGATTCTTCAAGTGTTCCTGCAAATGACTCTGCCGATTCTGACTGTGTAGAATGCAAGCCTGGATCATCCAACATCAACCCCAGCTGTAGCAACTCAGAACACGTGTCAAGAGCTAATTTTGGAACAACTTTTGGGCCAATATCTGAGAATTCTGGACTCAATGGAAACTCAACTTTTGAGCATTGTACAAACAATGGTGACAGGAGCAGTACCAGGTTAATCGGAACATCTTCACAAGAAAATCCAACCTGTGGTTCTTTGTGTTATGAGCCACCACAGTTAGATGGTTCAGTTCCCATAGATTCTCTTTATTTAAATTATACTTGCCAGCAGAATGAGTACTGTCCGAGTCCAACGATGTCACCTACTGGTTTCTTCACTCCACCTCGTGCGAAGGGTAGTGAATTATGCACTGAGACACCTGAATCGATCTTGAGAAAGGCTGCTAATACTTTTCCAAATACTCCTTCCATATTGAGGAGGAGAAGAACTGGGGCCCAAACACTCACCAGTCCCACTAAAGTTTTGAAAGTAGATAATAATCCACATACTTCTAATAAAACAGAGAGAACCAATGATGATTCTGGTTCTGGGCATTTCTCCGGGAGTCCAGCAAGCCATGGCTATGGGATTGGCATTCCCAACAATAAGGCATTCAATGCATCTCCCCCATACAGGTTAAGATCCAAGCGAACAGCAATTGTCAAGTCAGTGGAGAAACAACTGGAGTTTGCATTTGACAAAGAGAAGAATGACGACAAGAGGAGTAATGTGATGACTGAAGATCGTCTGCATGAAAAAAAATTGGTTGTGACATAG

Predicted protein sequences of Glyma07g15820

Limit To All Plant Sequences

>Glyma07g15820.4   sequence type=predicted peptide   gene model=Glyma07g15820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEVVKSEECCQENKQSTAASCSSVSEGSGSAIHKSPGRCSPASTSPSHRRTTGPIRRAKGGWTAQEDETLRNAVAVFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLHGRTDNAIKNHWNSSLKKKLDFYLATGRLPPIPKNSPQVPVKDTIRRSASKSMLGCSNKELNAAVETSSETTAISKLDDSGRNQFESSGTVREVGDSSSVPANDSADSDCVECKPGSSNINPSCSNSEHVSRANFGTTFGPISENSGLNGNSTFEHCTNNGDRSSTRLIGTSSQENPTCGSLCYEPPQLDGSVPIDSLYLNYTCQQNEYCPSPTMSPTGFFTPPRAKGSELCTETPESILRKAANTFPNTPSILRRRRTGAQTLTSPTKVLKVDNNPHTSNKTERTNDDSGSGHFSGSPASHGYGIGIPNNKAFNASPPYRLRSKRTAIVKSVEKQLEFAFDKEKNDDKRSNVMTEDRLHEKKLVVT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain