Glyma07g31050 - SoyBase

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Report for Sequence Feature Glyma07g31050

Feature Type:	gene_model
Chromosome:	Gm07
Start:	35988703
stop:	35998117
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g31050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G29990	AT	Annotation by Michelle Graham. TAIR10: alternative NAD(P)H dehydrogenase 2 \| chr2:12793562-12795913 REVERSE LENGTH=508	SoyBase	E_val: 0	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0031304	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intrinsic to mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0003954	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NADH dehydrogenase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
KOG2495	KOG	NADH-dehydrogenase (ubiquinone)	JGI		ISS
PTHR22915	Panther	NADH DEHYDROGENASE-RELATED	JGI		ISS
PTHR22915:SF4	Panther	NADH DEHYDROGENASE-RELATED	JGI		ISS
PF00070	PFAM	Pyridine nucleotide-disulphide oxidoreductase	JGI		ISS
PF07992	PFAM	Pyridine nucleotide-disulphide oxidoreductase	JGI		ISS
UniRef100_G7JQS9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: External NADH-ubiquinone oxidoreductase n=1 Tax=Medicago truncatula RepID=G7JQS9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KLE3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KLE3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g31050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g31050

Paralog	Evidence	Comments
Glyma08g06261	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g31050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g191200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g31050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g31050

Limit To All Plant Sequences

>Glyma07g31050.1   sequence type=CDS   gene model=Glyma07g31050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTGGCAAGGATTGCTAGGGCCAACCTGAGAAGATCAGGAGGTGCTTTTGGCAGTTATGCTCATGAGAAGGATACGTTCAATGTAGGAGGATACACAAGCAGATGCAACATACCTTCCCATGCAAATTTTGAATCAGATGGAAAGTTTTCATATGCTCCAAGAATTAAGGAACAGAACTACATGAACTTTTCAATGAGGGGAATATCAGGAACGCCACACCATCAGTTTCCTTCTGCTAGCACACAGACGGTTATAGAGGAATCTGAGTATGAGTTTGAGAATGATCGGCAAAGATATGCTGGACTAGAGGCAACAAAGCCAGGTGAAAAGCCTAGGGTGGTTGTTCTTGGTACGGGTTGGGCTGCGTGTCGGTTCCTCAAAGGGATAGACACCAAAATTTATGATGTTGTGTGCATATCACCAAGGAATCACATGGTCTTTACTCCTTTGCTTGCTTCAACGTGTGTTGGAACCCTGGAATTCAGAACTGTTACTGAGCCTGTATCCAGAATACAGGATGCATTAGCAAGGGACCCTAACTCCTACTTCTTTCTAGCTTCTTGCACTGGCATTGACACAGGCAAACATGAAATCTATTGTGAGGCAGTTAACAATGGTGGATTGCCTCAAGAGCCTTACCAATTCAAAGTCGCTTATGACAAGCTTGTAATTGCAACAGGATCTGAGCCTTTAACTTTTGGCATCAAGGGAGTAAAGGAAAATGCTTTTTTTCTTCGTGAAGTGAACCATGCTCAAGAAATAAGGAAGAGACTTCTCCTTAATCTGATGCTTTCTGAAAACCCAGGCATATCAGAAGAAGAAAAGAAATGCCTTCTGCACTGTGTAGTTATTGGAGGTGGCCCTACAGGAGTGGAATTTAGTGGTGAATTGAGTGATTTCATCATGAGAGATGTTCATGAGCGCTATACTCATGTCAAAGATTACATTCACGTAACACTCATTGAGGCAAACGAGATACTGTCATCCTTTGATGTTAGCCTACGGCAATATGCAACAAAGCACTTAACAAAGTCCGGGGTCCGTCTTATGCGAGGTGTAGTGAAGGAGGTGCATCCCAAAAAGATAATTCTGAGTGATGGAACAGAAGTTCCTTATGGCCTCTTGGTTTGGTCCACAGGGGTTGGTGCTTCTCAGTTTGTGAAAACACTAGATCTTCCTAAATCTCAAGGTGGAAGAATTGGTGTAGATGATTGGCTGCGTGTTCCCTCGGTGGAAGATGTCTTTGCCCTTGGAGATTGTGCTGGTTTTCTTGAACACACTGGAAGACCTGTGCTTCCAGCTCTAGCTCAGGTTGCTGAAAGGCAGGGAAAGTTTCTTGTGGAATTGTTCAACGAAATAGGGAATCAGAATGGAGGCAAGGCTTATTCTGCAAAAGGCATGCCATTTGGAGAGCCTTTTGTGTATAGGCATCTTGGGAGTATGGCATCAGTAGGTGGCTACAAAGCACTGGTTGATCTACGACAGTCAAAGGATTCAAAGGGGTTGTCACTTGCTGGTTTTGTTAGCTGGATGATATGGCGCTCTGCATATCTTACACGTGTCCTTAGCTGGAGGAACAGGTTTTACGTGGCAGTGAACTGGGCCACCACATTAGTCTTCGGCAGAGACAACAGCAGGATAGGTTGA

Predicted protein sequences of Glyma07g31050

Limit To All Plant Sequences

>Glyma07g31050.1   sequence type=predicted peptide   gene model=Glyma07g31050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALARIARANLRRSGGAFGSYAHEKDTFNVGGYTSRCNIPSHANFESDGKFSYAPRIKEQNYMNFSMRGISGTPHHQFPSASTQTVIEESEYEFENDRQRYAGLEATKPGEKPRVVVLGTGWAACRFLKGIDTKIYDVVCISPRNHMVFTPLLASTCVGTLEFRTVTEPVSRIQDALARDPNSYFFLASCTGIDTGKHEIYCEAVNNGGLPQEPYQFKVAYDKLVIATGSEPLTFGIKGVKENAFFLREVNHAQEIRKRLLLNLMLSENPGISEEEKKCLLHCVVIGGGPTGVEFSGELSDFIMRDVHERYTHVKDYIHVTLIEANEILSSFDVSLRQYATKHLTKSGVRLMRGVVKEVHPKKIILSDGTEVPYGLLVWSTGVGASQFVKTLDLPKSQGGRIGVDDWLRVPSVEDVFALGDCAGFLEHTGRPVLPALAQVAERQGKFLVELFNEIGNQNGGKAYSAKGMPFGEPFVYRHLGSMASVGGYKALVDLRQSKDSKGLSLAGFVSWMIWRSAYLTRVLSWRNRFYVAVNWATTLVFGRDNSRIG*

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