Report for Sequence Feature Glyma08g01930
Feature Type: gene_model
Chromosome: Gm08
Start: 1261579
stop: 1266037
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g01930
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G23440 AT
Annotation by Michelle Graham. TAIR10: Disease resistance protein (TIR-NBS class) | chr4:12237765-12240659 FORWARD LENGTH=964
SoyBase E_val: 0 ISS
GO:0000271 GO-bp
Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process
SoyBase N/A ISS
GO:0007165 GO-bp
Annotation by Michelle Graham. GO Biological Process: signal transduction
SoyBase N/A ISS
GO:0009630 GO-bp
Annotation by Michelle Graham. GO Biological Process: gravitropism
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0017111 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity
SoyBase N/A ISS
GO:0043531 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ADP binding
SoyBase N/A ISS
UniRef100_B9RCE1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Nucleoside-triphosphatase, putative n=1 Tax=Ricinus communis RepID=B9RCE1_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI0002338413 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338413 related cluster n=1 Tax=unknown RepID=UPI0002338413
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g01930
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g01930
Paralog Evidence Comments
Glyma05g37660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g01930 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g016000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g01930
Coding sequences of Glyma08g01930
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g01930.2 sequence type=CDS gene model=Glyma08g01930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATGGATATTCAAGAAGAGAGCTCCACCACACTTGGACCCTTGACAGCAAAGAGTTCAAGGAACATGTCATCCTCGTCTTCAGCCTTTTTTTCAGCCAATCAGTCACCCTTCTTCTCTCCAAGATCATCATCATGTCAGTTATCAGAGTCTTTGCGACCCGATGCTCCCAGTGACAGAATTCATTCAGATGCTGCTGCCCCCAGCACCATTTCAGGGATTCCAGAACCAAAGTCTATTGTGAATGTTGGATGCTCCTTCTCTGAGGTGGCTGCATCTCCAGCTGGCTGTAATGCAGGTGATTTGCAGAACCTTGATCGCATATCTTCCTCAGTCGGCATCTCTAGTAGCACTGTGTCTGGTTATTGCCATCCTTATGATGATGGTTATTCTGGGCTGAAAGAGAAGAGAAGCAAGAGAGGCAGAAACAAAAGAACATCATCAACACCAGGTTCTAGATCACTTTCTTCTTATAGACTAAAGAGTTGTGATGTCTTTATAGGACTACATGGTCGTAAACCTCCTCTAATAAGATTTGCCAATTGGTTGCGTGTCGAGTTAGAAATTCAAGGCATAAGTTGTTTTATATCAGATAGGGCTGGATGTAGAAACTCTTGCAAGCTTGGCATTGCAGAGAAAGCTATGGATGTTGCTTCTTTTGGGATAGTAATTATAACAAGGAAGTCTTTCAAGAACCCATACACAATTGAGGAGCTGCAGTTTTTCTCTGGCAAGAAGAACTTGGTCCCTATATACTTTGATTTGAGTCCAGCCGATTGTCTTGTGAGGGATATATTTGAGAAGAGGGGTGAGCTGTGGGAAAAACATGGAGGGGAGCTTTGGCTTTTGTATGGAGGGTTGGAGCAGGAGTGGAAAGATGCTGTTCATGGCCTCTCACGTGTTGAAGAATGGAAGTTGGAAGCTCATGATGGAAACTGGAGAGATTGCATACTGAGGGCTGTAACATTATTAGCAATGAAGTTAGGCAGAAGAGGTGCGGCTGAGCATTTGACAAAATGGAGGGAGAAAGTGAAAGAAGAAGAGCTGCCTTTCACTCGTAATGAGAACTTCATTGGTAGGAAGAAAGAGCTTTCTCAACTGGAGTTTATGCTTTTTGGTGATGTTACTGGAGATTCAAGGCAAGACTATATCGATCTTAAGGCCAGACCGAAACGAAGGCATTTGACTATTGGTCGGGGAAAGAGTAGTGTGCTAGATGAGAGACATATGGGAAATGGAACTAGGGAGGAAAAAACATCAGTTCTATGGAAGGAGTCAGAAAAAGAAATTGAAATGCAAAGTATTGAGTTTTCTCACGGGCACCACCGATCAAGGATCAAGTGTGGTGGAAAGTATACTAGGAGGAAAAGAGGAATGAAGATTGTGTATGGGAAAGGGATTGCCTGCATATCAGGAGATTCAGGAATTGGTAAAACAGAACTTATTCTTGAGTTTGCTTACAGATTTCACCAGAGATACAAGATGGTTTTATGGATAGGAGGGGAGAGTAGGCATATAAGGCAAAACTATCTAAAACTCAGGTCCATTTTAGAAGTTGATTTGAGTGTTGAGAATAGTTTGGAAAAAACTAGGATAAAAGGGTTTGAAGAACAAGAAGAAGCAGCCGTTTCTGGAATTCGCAACGAGCTAATGAGAAACATTCCGTATCTTGTGATCATTGATAACTTGGAAAGCGAAAAGGATTGGTGGGATCACAAACTTGTGATGGATCTCCTCCCTCGTTTTGGTGGAGAGACCCATATAATTATATCAACATGCCTTCCTCGTGTCATGAACTTGGAACCTCTAAAAGTTTCATACTTATCTGGAGTTGAAGCAATGTCTCTAATGCTAGGAAGTGGCAAGGACTATCCAGTTGCAGAGGTTGATGCTCTGAGAACTATTGAGGAGAAGCTTGGGAGGTTAACTTTGGGCCTTGCCATTGTTAGTGGAATTTTGTCTGAGATACCTATAACCCCAAGCAGGCTCTTAGATACCATAAACAGAATACCCTTGAAGGACATGTCATGGAGTGGTAAAGAAGCTCACTCATTCAGGCAGAACACTTTCCTGCTGCAACTCTTTGATGTTTGTTTCTCAATATTTGATCATTCAGACAGCCCGAGGAGCTTGGCAACCAGAATGGTACTGGTAAGTGGATGGTTTGCACCTTGTGCAATTCCAGTTTCCTTATTGGCACTTGCTGCTCAGAAGATACCAGAAAAGCAAAAGGGGACTTGTTTCTGGAGAAAATTACTGCAATCCTTAACATGTGGGTTCACATCCTCACACACCAAAAAATCAGAATTAGAAGCATCTTCCCTACTGCTAAGATTCAACATTGCAAGGAGTAGTACTAAGCAAGGACATATCTATTTCAATGACATCATCAAACAATATGCTCGGAAAAGAGAAGTTACCGGATCTGCACAAGCAATGGTTCAAGCTGTTATCAGTCAAGGGTCAATATCTGAAAACATAGAGCATTTATGGGCTGCATGTTTTCTGCTATTTGCATTTGGTCATAATCCTCCGGCTGTTGAACTCGAGGTTTCTGAGTTCTTATATCTTGTTAAAAAAGTGGTTCTGCCTCTTGCAATTCACACTTTCATCACGTACTCTAGATGCACTGCTGCTATAGAGCTTCTGCACCTTTGCACCAATGCCTTGGAAGCTGCAGACCAAGCATTTGTTACCCCAGTTGACAAGTGGTTTGACAAATCCCTTTGCTGGAGGTCCATCCAGACTAATGCTCAGTTGAATCCTTGCCTTTGGCAAGAGTTGGCTTTGTGTAGAGCTACTGTGCTCGAGACTAGGGGCAAACTAATGCTAAGAGGTGCACAATTTGACATAGGGGATGATCTAATCAGGAAGGCCGTTTATATCAGGACTTCAATTTGTGGTGAAGATCATCCCGATACCATATCTGCTCGTGAAACATTAAGCAAACTCACCAGACTAATTGCAAATGTCCAAATTCGTGCTTCTACATAG
Predicted protein sequences of Glyma08g01930
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g01930.2 sequence type=predicted peptide gene model=Glyma08g01930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MMDIQEESSTTLGPLTAKSSRNMSSSSSAFFSANQSPFFSPRSSSCQLSESLRPDAPSDRIHSDAAAPSTISGIPEPKSIVNVGCSFSEVAASPAGCNAGDLQNLDRISSSVGISSSTVSGYCHPYDDGYSGLKEKRSKRGRNKRTSSTPGSRSLSSYRLKSCDVFIGLHGRKPPLIRFANWLRVELEIQGISCFISDRAGCRNSCKLGIAEKAMDVASFGIVIITRKSFKNPYTIEELQFFSGKKNLVPIYFDLSPADCLVRDIFEKRGELWEKHGGELWLLYGGLEQEWKDAVHGLSRVEEWKLEAHDGNWRDCILRAVTLLAMKLGRRGAAEHLTKWREKVKEEELPFTRNENFIGRKKELSQLEFMLFGDVTGDSRQDYIDLKARPKRRHLTIGRGKSSVLDERHMGNGTREEKTSVLWKESEKEIEMQSIEFSHGHHRSRIKCGGKYTRRKRGMKIVYGKGIACISGDSGIGKTELILEFAYRFHQRYKMVLWIGGESRHIRQNYLKLRSILEVDLSVENSLEKTRIKGFEEQEEAAVSGIRNELMRNIPYLVIIDNLESEKDWWDHKLVMDLLPRFGGETHIIISTCLPRVMNLEPLKVSYLSGVEAMSLMLGSGKDYPVAEVDALRTIEEKLGRLTLGLAIVSGILSEIPITPSRLLDTINRIPLKDMSWSGKEAHSFRQNTFLLQLFDVCFSIFDHSDSPRSLATRMVLVSGWFAPCAIPVSLLALAAQKIPEKQKGTCFWRKLLQSLTCGFTSSHTKKSELEASSLLLRFNIARSSTKQGHIYFNDIIKQYARKREVTGSAQAMVQAVISQGSISENIEHLWAACFLLFAFGHNPPAVELEVSEFLYLVKKVVLPLAIHTFITYSRCTAAIELLHLCTNALEAADQAFVTPVDKWFDKSLCWRSIQTNAQLNPCLWQELALCRATVLETRGKLMLRGAQFDIGDDLIRKAVYIRTSICGEDHPDTISARETLSKLTRLIANVQIRAST*