Report for Sequence Feature Glyma08g09710
Feature Type: gene_model
Chromosome: Gm08
Start: 6900766
stop: 6903158
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g09710
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G01990 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14630.1); Has 118 Blast hits to 118 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:465197-466497 REVERSE LENGTH=213
SoyBase E_val: 8.00E-64 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_G7J8M9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Glutamate decarboxylase n=1 Tax=Medicago truncatula RepID=G7J8M9_MEDTR
SoyBase E_val: 1.00E-23 ISS
UniRef100_I1KRN8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRN8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g09710
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g09710
Paralog Evidence Comments
Glyma05g26710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g09710 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g091800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g09710
Coding sequences of Glyma08g09710
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g09710.1 sequence type=CDS gene model=Glyma08g09710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACCACCTTCATTCCTTAGCTTACACTACCACCACTAACCTCTGTGGCTCTTCCCTAGGTTGGGATTATCACAACCTTGGAGTTCTCAACGCGGACAAAATGTCTTTAATGCCAGCTATGGAGGGAAGTACTACACCACCATCACTATCATCACCTCAACACTCTGATTTCTCAACTGGGTATCTCGAAGATGCTTTGATTGAATCATGTGAGCGTTCCAAACGTAGACGTGTGTTACCATGTGCTGCTGATGAACATAGCAAGAGTTTCATTGATGACCTTGAGCAGAGTTTCTGGAATTTCAACCCCTTATGGAACCAACCAGTAGAGAACTTCAACTTCTACTGCATGAACCAGATAGAAAGGTTTTGTGGATTTTCAGATGAGCATATAAGCACATCAAGGAGCGAGGAAGCAAACATTCTTCTAGCAGACACTAAAACACCGGAAGAGACAATATCAGCCTCTGAATCTTTAAATTCATCCTCATCTTCATACAAACAACCGGTGACATGCAAAACCACAGACCCCACTGTTGCCCCAACAGAAAATGATGATACCAGGAACAAGAAGGTGGTAACAAGAGTGGTGTATCCATTTGCAATGGTGAAGCCAGGAGGAAGAGAAGGTGATGTAACATTGAATGACATAAATGAGAGGATCCTAATGCCTCCCACAAGGCCAGTGAGGCATCCTGTAGGAGACTTTGCATGTCGGCCATGCGTGTCCGCAGAGGGTCCAGGCCTTTCAGGGAAAGCAGTGGTGGCCCTTACTAGAATTCACACACAGGGAGGAAGAGGCACCATCACTATTATCAGAACCAAAGGCTAA
Predicted protein sequences of Glyma08g09710
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g09710.1 sequence type=predicted peptide gene model=Glyma08g09710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNHLHSLAYTTTTNLCGSSLGWDYHNLGVLNADKMSLMPAMEGSTTPPSLSSPQHSDFSTGYLEDALIESCERSKRRRVLPCAADEHSKSFIDDLEQSFWNFNPLWNQPVENFNFYCMNQIERFCGFSDEHISTSRSEEANILLADTKTPEETISASESLNSSSSSYKQPVTCKTTDPTVAPTENDDTRNKKVVTRVVYPFAMVKPGGREGDVTLNDINERILMPPTRPVRHPVGDFACRPCVSAEGPGLSGKAVVALTRIHTQGGRGTITIIRTKG*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
