Report for Sequence Feature Glyma08g21420
Feature Type: gene_model
Chromosome: Gm08
Start: 16254197
stop: 16257547
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g21420
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G51260 AT
Annotation by Michelle Graham. TAIR10: HAD superfamily, subfamily IIIB acid phosphatase | chr5:20832222-20833466 REVERSE LENGTH=257
SoyBase E_val: 1.00E-72 ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003993 GO-mf
Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity
SoyBase N/A ISS
PTHR11726 Panther
60S RIBOSOMAL PROTEIN L10
JGI ISS
PTHR11726:SF1 Panther
50S RIBOSOMAL PROTEIN L10E
JGI ISS
PF03767 PFAM
HAD superfamily, subfamily IIIB (Acid phosphatase)
JGI ISS
UniRef100_I1KV12 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KV12_SOYBN
SoyBase E_val: 0 ISS
UniRef100_O49855 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Acid phosphatase n=1 Tax=Glycine max RepID=O49855_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g21420
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g21420
Paralog Evidence Comments
Glyma07g01740 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g21420 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g200200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g21420
Coding sequences of Glyma08g21420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g21420.1 sequence type=CDS gene model=Glyma08g21420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAAAAGTTAGTAGTAGTGAAGAAAATGAAAGTCCTTGTTTTCTTTGTTGCTATAGTTCTAGCAGCATGGCATTGCCATGGCTCAGACCATGACCATGACCATGGCCACACCTACCAAATTTTCCCTCTGAGAATGAAAACTGGCCATGGTGGCCACTACATTCCGGAGGTATCATGCCAAAGTTGGAGGCTTGGTGTGGAAGCACACAACGTCATTGACTGGAAAACCGTTCCTCAAGATTGCGAGGGATATATTGGGAACTACATGCTTGGCGAACAATATAGATCAGACTCCAAAATAGTTAACCAACAAGCTTATTTCTATGCTAAAACCCTCAATATCACTGCCAAAACCGCATGGGTGTTCGACATAGATGAGACTACACTCTCTAATCTCCCTTACTATGCTGACCATGGATTTGGGGTGGAGTTATATAATGAAACATCGTTTAATAAATGGGTTGACCTTGGCGAGGCACCGGCACTGCCAGAGAGTCTCAAATTGTACAAGAAACTGTTGTCTCTTGGCATCAAGATTGTATTCATCACAGGAAGACCACTGGATCAAAAGGCTGTAACTGCTACCAACTTAAAGCTTGCTGGATATCACACATGGGAAAAGTTAATTACCAAGAATACATCTGAATACCATGGTAAGACAGCAGTTACATACAAATCTACTGAGAGAAAGAAGCTGGAGGAAAAAGGATACAAAATCATTGGAAACATTGGAGACCAATGGAGCGATCTATTAGGAACCAACACAGGCGATAGGACCTTTAAGTTGCCTGATCCCATGTACTACATTAGTTGA
Predicted protein sequences of Glyma08g21420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g21420.1 sequence type=predicted peptide gene model=Glyma08g21420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQKLVVVKKMKVLVFFVAIVLAAWHCHGSDHDHDHGHTYQIFPLRMKTGHGGHYIPEVSCQSWRLGVEAHNVIDWKTVPQDCEGYIGNYMLGEQYRSDSKIVNQQAYFYAKTLNITAKTAWVFDIDETTLSNLPYYADHGFGVELYNETSFNKWVDLGEAPALPESLKLYKKLLSLGIKIVFITGRPLDQKAVTATNLKLAGYHTWEKLITKNTSEYHGKTAVTYKSTERKKLEEKGYKIIGNIGDQWSDLLGTNTGDRTFKLPDPMYYIS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
