SoyBase NEW SoyBase for review!
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g21471

Feature Type:gene_model
Chromosome:Gm08
Start:16313150
stop:16320296
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g21471
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G51940AT Annotation by Michelle Graham. TAIR10: protein kinase family protein / peptidoglycan-binding LysM domain-containing protein | chr1:19296092-19298941 REVERSE LENGTH=651 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007020GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule nucleation SoyBaseN/AISS
GO:0016998GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule catabolic process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF930Panther JGI ISS
PF01476PFAM LysM domain JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
UniRef100_D3KTZ5UniRef Annotation by Michelle Graham. Most informative UniRef hit: LysM type receptor kinase n=2 Tax=Lotus japonicus RepID=D3KTZ5_LOTJA SoyBaseE_val: 0ISS
UniRef100_UPI0002337C43UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337C43 related cluster n=1 Tax=unknown RepID=UPI0002337C43 SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g21471
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g21471 not represented in the dataset
Glyma08g21471 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g21471
ParalogEvidenceComments
Glyma07g01810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g21471 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g200800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g21471
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g21471
>Glyma08g21471.1   sequence type=CDS   gene model=Glyma08g21471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCTTCTGTTGCAAAAACCCCATTGGGGGTTGCTTCTTCTCTTTCTCCTCTTTCAGCTTCACAGCAGCACCTGCTACCCCACAGAACCCATGAACTGTACGGACACAAGCCGTGTTTGCACTTCTTTCATGGCCTTCAAGCCTGGACCGAACCACACACTTGCTCTGATTCAAAGCATGTTTGATGTTTTGCCTGGTGACATCACAGTTGAAGGCACCGGTTGGGGTTACATGTTCATAAGGAAGAACTGTTCTTGTGCTGCTGGCATAAAAAATTACGTGTCCAACACCACTTTCACTGTGAAATCCAATGAGGGGTTGCTGTATGACATGGTGATGGATGCCTATGATGGCCTAGCTTTCCTTCCCAACACAACCAGGATGGCCAGGAATGGTGCTGTTGTGTCACTGACGTTGTTTTGTGGCTGTTCCAGTGGATTATGGAACTATTTGGTCAGTTATGTGATGAGAGATGGAGATAGTGTTGAGTCCTTGGCAAGCAGGTTTGGGGTTAGTATGGATAGCATTGAGAGTGTGAATGGCATTGGTAATCCTGATAATGTCACTGTTGGTTCACTTTATTATATACCCCTTGATTCTGTTCCTGGTGATCCTTATCCCCTAAATAATGCTGCTCCACCAGTTCCTGTTCCTTCCCCATCCTTCGATAATTTTTCAGCTGATCAAGTCAATCATAAGGCTCATGTACCCTATGGATGGATCGTTGGGGGTTTAGGAGTTGCGCTTGTTCTAATAATATTAACTGTTATTCTTTGTGTTTGTCTGAGATCATCAAATTGTTTTGCTGATACCAGAACTCATGAGAAAGATGCTGAGGGTAAGGTCTCTCATAAATTCCATATTCTTCGGAACCCAAGTTTTTTTTGTGGTTCTGGAAGGTACATATGTGGCAAACATGTTGATAAGAAGCAAACAGATGGTGAATCCAGCAATCACACAATTACCATTCCCAAAGCTTCAACTCTTGGGCCTGACGTATTTGACATGGATAAGCCTGTTGTTTTTACATATGAAGAGATTTTCTCCACAACTGATGGTTTCTCAGATACAAGTCTACTTGGGCATGGAACATATGGTTCTGTTTATTATAGCCTCCTCCGTGATCAGGAAGTTGCTATTAAAAGAATGACAGCTACTAAAACAAAAGAGTTTATGTCTGAGATGAAAGTTTTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATTGGCTATGCAGCTAGTCATGAGGAGCTTTTCCTGGTATATGAATATGCTCAGAAGGGTTCACTCAAAAGCCATTTGCATGATCCTCAAAATAAGGGCCACTCCCCACTTTCTTGGATCATGAGGGTCCAGATTGCACTTGATGCTGCTAGGGGACTTGAATACATACATGAGCACACAAAAACTCATTATGTTCACCGTGATATCAAGACAAGTAACATTTTACTTGATGCTTCCTTTAGAGCAAAGATTTCAGATTTTGGGTTAGCAAAACTTGTTGGAAAAGCAAATGAGGGAGAAATTTCAACTACCAAAGTTGTTGGTACATATGGATATCTTGCTCCAGAATATTTGAGTGATGGTCTTGCGACCACTAAAAGTGATGTCTATGCATTTGGTGTTGTCCTTTTTGAGATCATATCAGGAAAAGATGCCATCATTCGATCTGAAGGCACAATGTCAAAAAATCCTGATAGACGTTCACTGGCATCCATAATGCTGGGAGTTCTTAGGAATTCACCTGATTCTATGAGCATGTCAAGCTTGAGAGAATATATTGATCCAAATATGATGGATCTGTATCCCCATGATTGTGTATTTAAGTTGGCCATGTTGGCAAAGCAATGTGTGGATGAGGACCCCATCTTACGACCTGATATGAGACAAGTTGTGATATCCCTTTCACAGATTCTGCTATCTTCAGTTGAGTGGGAAGCAACTCTAGCTGGGAATAGCCAGGTTTTCAGTGGCCTTGTTCAGGGAAGATAG
Predicted protein sequences of Glyma08g21471
>Glyma08g21471.1   sequence type=predicted peptide   gene model=Glyma08g21471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMLLLQKPHWGLLLLFLLFQLHSSTCYPTEPMNCTDTSRVCTSFMAFKPGPNHTLALIQSMFDVLPGDITVEGTGWGYMFIRKNCSCAAGIKNYVSNTTFTVKSNEGLLYDMVMDAYDGLAFLPNTTRMARNGAVVSLTLFCGCSSGLWNYLVSYVMRDGDSVESLASRFGVSMDSIESVNGIGNPDNVTVGSLYYIPLDSVPGDPYPLNNAAPPVPVPSPSFDNFSADQVNHKAHVPYGWIVGGLGVALVLIILTVILCVCLRSSNCFADTRTHEKDAEGKVSHKFHILRNPSFFCGSGRYICGKHVDKKQTDGESSNHTITIPKASTLGPDVFDMDKPVVFTYEEIFSTTDGFSDTSLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFMSEMKVLCKVHHANLVELIGYAASHEELFLVYEYAQKGSLKSHLHDPQNKGHSPLSWIMRVQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKANEGEISTTKVVGTYGYLAPEYLSDGLATTKSDVYAFGVVLFEIISGKDAIIRSEGTMSKNPDRRSLASIMLGVLRNSPDSMSMSSLREYIDPNMMDLYPHDCVFKLAMLAKQCVDEDPILRPDMRQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo