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Report for Sequence Feature Glyma08g44655

Feature Type:gene_model
Chromosome:Gm08
Start:44217229
stop:44218588
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g44655
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G49475AT Annotation by Michelle Graham. TAIR10: AP2/B3-like transcriptional factor family protein | chr1:18312983-18313748 FORWARD LENGTH=190 SoyBaseE_val: 1.00E-23ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF02362PFAM B3 DNA binding domain JGI ISS
UniRef100_G7J3B6UniRef Annotation by Michelle Graham. Most informative UniRef hit: B3 domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J3B6_MEDTR SoyBaseE_val: 2.00E-42ISS
UniRef100_UPI0002338F58UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338F58 related cluster n=1 Tax=unknown RepID=UPI0002338F58 SoyBaseE_val: 3.00E-115ISS

Expression Patterns of Glyma08g44655
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g44655 not represented in the dataset
Glyma08g44655 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g44655 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma08g44655
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g44655
>Glyma08g44655.1   sequence type=CDS   gene model=Glyma08g44655   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTCACAGCTTGACGATGGAGATGGCTCCTACGGTTACAGTGCAACAAAGCCAATCCACTTTTTCAGGATCATGCTCCATGAGAACCTTCTGCAAGGAAATCTAAGGCTTCCGGAGAAGTTTGTGAGGAAATATGGAAATCACTTATCCAACTCAATGCTTCTTAAGCTTCCAAACGGTATAGAATGGAAGGTAAATTTGGAGAAACGTGATGGTAGTGTTTGGTTTCAAGAAGGTTGGAAAGACTTTGCAGAGTATTACTCTCTGGCCAATGGGCACCTATTGGGTTTTAGATACGATGGAACATCCCATTTTCATGTATTCATCTGTGATATGAGTACCATGGAAATAGAGTACCCTGTCAACAAAGCAAATCACAAAAGACCAAGCATTAATAGTGAAGAAAGTCAACCACATAAGACACAGAAAACAGATGAAAATATGAACAAGAGTAATTCCAATTTGCAGGACACTGACATTCATAAAGAAGCCAGAGACCACAAAGGTAAGGGAAACATGGAAGGGTCATCCATTAGTAACTGTGGAAATCATGAAGCAGCTGGAAATACTTCATTCACCGTGATAATGAAATCAAGCTACCACCGACACCGACACGGACACCGGACACGACACGGACACGGACACGTGGATACCTGTAATGTCCAAAATATAGAACGTAATACGGGTGTCGTGTCGGTGTCGGACACTGACACGGACGCGTGTCGGACACCGGACACGGCAAAGGGCTGA
Predicted protein sequences of Glyma08g44655
>Glyma08g44655.1   sequence type=predicted peptide   gene model=Glyma08g44655   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSQLDDGDGSYGYSATKPIHFFRIMLHENLLQGNLRLPEKFVRKYGNHLSNSMLLKLPNGIEWKVNLEKRDGSVWFQEGWKDFAEYYSLANGHLLGFRYDGTSHFHVFICDMSTMEIEYPVNKANHKRPSINSEESQPHKTQKTDENMNKSNSNLQDTDIHKEARDHKGKGNMEGSSISNCGNHEAAGNTSFTVIMKSSYHRHRHGHRTRHGHGHVDTCNVQNIERNTGVVSVSDTDTDACRTPDTAKG*






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