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Report for Sequence Feature Glyma09g02310

Feature Type:gene_model
Chromosome:Gm09
Start:1525108
stop:1532259
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G04760AT Annotation by Michelle Graham. TAIR10: vesicle-associated membrane protein 726 | chr1:1334760-1336070 FORWARD LENGTH=220 SoyBaseE_val: 9.00E-128ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0048451GO-bp Annotation by Michelle Graham. GO Biological Process: petal formation SoyBaseN/AISS
GO:0048453GO-bp Annotation by Michelle Graham. GO Biological Process: sepal formation SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG0859 KOG Synaptobrevin/VAMP-like protein JGI ISS
PTHR21136Panther SNARE PROTEINS JGI ISS
PTHR21136:SF46Panther SUBFAMILY NOT NAMED JGI ISS
PF00957PFAM Synaptobrevin JGI ISS
UniRef100_B9SVX6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Vesicle-associated membrane protein, putative n=1 Tax=Ricinus communis RepID=B9SVX6_RICCO SoyBaseE_val: 2.00E-138ISS
UniRef100_I1L0A9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L0A9_SOYBN SoyBaseE_val: 2.00E-163ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma15g13220 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g019800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma09g02310.2   sequence type=transcript   gene model=Glyma09g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCCATTCGATGTTTCAATTTGAAAGTTCAAAGCTCCCCTTTCACATTTCAATTCTCTCTCTTTTAAACCCTGCTCTCCATTTTGTCTCTTCCTTTCTCTCTCTACAAAGAGTGCGTGTGAGAGTGAGAGAGAGAGAGAGAGGGATTTGGAACTTTGGATATCTATAGCGAAAGCGTGACACCACCAAAAACCGAACTGTTCCCAGATCTCTCTCTCACTCTTCCAACAATCGAAATCCAAAACCCTACCGACACCACACTCAATCGAAATTCTTCATTCTCTTCTCATCGATGGGGCAGAAGTCTCTGATCTACGCGTTCGTGTCGCGGGGAACAGTGATTCTCGCGGAGTACACCGAATTCAGCGGAAACTTCAACTCCATCGCCTTCCAGTGCCTTCAGAAGCTCCCTGCCACCAACAACAAGTTCACCTACAATTGCGACGCACACACCTTCAATTACCTCGTCGACAATGGCTACAATGAATCAATTGGAAGACAGTTACCCATGGCTTTTCTAGAGCGTGTCAAAGATGAATTTGTGTCAAAATATGGTGGTGGAAAGGCTGCCACAGCTCCTGCAAACAGCCTTAACAAGGAATTTGGGCCAAAGTTGAGGGAACATATGCAGTACTGTGTTGATCATCCTGAAGAGATAAGCAAACTTGCAAAGGTGAAAGCTCAGGTTTCTGAAGTTAAGGGTGTCATGATGGAGAATATTGAAAAGGTTCTGGACAGGGGTGACAAGATAGAACTTCTGGTGGACAAGACTGAGAACCTTCATAACCAGGCACAAGATTTCAGGACTTCTGGAACCAGAATCCGTCGAAAAATGTGGCTGCAAAACATGAAGATAAAGCTGATTGTATTGGGAATATTGATAGCACTTATCCTGATAATAGTCCTATCTGTGTGTCGTGGGTTCAACTGTGGAAAATAGCACCATTCTCCGAGGCCTTTTATCATGTTATTTCAACCTTGAGATTATCGGAGAAAAGATACTAATGAATGGCATGAGTTTGTATGTAATATAGATATAGATATAGTAAAGGTCGTATGTTGGTCACTTTGATCTACTTATAAATGCTTTTGAAAATATAATTTGGGTTGTCAAATTGAAATTTGATTTCCATTTTATTCATATTCATGAATCATGTAAATGTGTTTCTTGATCATATTCTTTAATGATTCCAGTTACAGCATTTTGGCATTGTCGACCTTTATTAGATTTATTGAACTTGTGGCCTTTCATTCCTGATTCCATCCTACATAAGGAGTGGAGAGGTTATTTCTTTC

>Glyma09g02310.1   sequence type=CDS   gene model=Glyma09g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCAGAAGTCTCTGATCTACGCGTTCGTGTCGCGGGGAACAGTGATTCTCGCGGAGTACACCGAATTCAGCGGAAACTTCAACTCCATCGCCTTCCAGTGCCTTCAGAAGCTCCCTGCCACCAACAACAAGTTCACCTACAATTGCGACGCACACACCTTCAATTACCTCGTCGACAATGGCTACACATATTGTGTTGTTGCAGATGAATCAATTGGAAGACAGTTACCCATGGCTTTTCTAGAGCGTGTCAAAGATGAATTTGTGTCAAAATATGGTGGTGGAAAGGCTGCCACAGCTCCTGCAAACAGCCTTAACAAGGAATTTGGGCCAAAGTTGAGGGAACATATGCAGTACTGTGTTGATCATCCTGAAGAGATAAGCAAACTTGCAAAGGTGAAAGCTCAGGTTTCTGAAGTTAAGGGTGTCATGATGGAGAATATTGAAAAGGTTCTGGACAGGGGTGACAAGATAGAACTTCTGGTGGACAAGACTGAGAACCTTCATAACCAGGCACAAGATTTCAGGACTTCTGGAACCAGAATCCGTCGAAAAATGTGGCTGCAAAACATGAAGATAAAGCTGATTGTATTGGGAATATTGATAGCACTTATCCTGATAATAGTCCTATCTGTGTGTCGTGGGTTCAACTGTGGAAAATAG

>Glyma09g02310.2   sequence type=CDS   gene model=Glyma09g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCAGAAGTCTCTGATCTACGCGTTCGTGTCGCGGGGAACAGTGATTCTCGCGGAGTACACCGAATTCAGCGGAAACTTCAACTCCATCGCCTTCCAGTGCCTTCAGAAGCTCCCTGCCACCAACAACAAGTTCACCTACAATTGCGACGCACACACCTTCAATTACCTCGTCGACAATGGCTACAATGAATCAATTGGAAGACAGTTACCCATGGCTTTTCTAGAGCGTGTCAAAGATGAATTTGTGTCAAAATATGGTGGTGGAAAGGCTGCCACAGCTCCTGCAAACAGCCTTAACAAGGAATTTGGGCCAAAGTTGAGGGAACATATGCAGTACTGTGTTGATCATCCTGAAGAGATAAGCAAACTTGCAAAGGTGAAAGCTCAGGTTTCTGAAGTTAAGGGTGTCATGATGGAGAATATTGAAAAGGTTCTGGACAGGGGTGACAAGATAGAACTTCTGGTGGACAAGACTGAGAACCTTCATAACCAGGCACAAGATTTCAGGACTTCTGGAACCAGAATCCGTCGAAAAATGTGGCTGCAAAACATGAAGATAAAGCTGATTGTATTGGGAATATTGATAGCACTTATCCTGATAATAGTCCTATCTGTGTGTCGTGGGTTCAACTGTGGAAAATAG

>Glyma09g02310.1   sequence type=predicted peptide   gene model=Glyma09g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQKSLIYAFVSRGTVILAEYTEFSGNFNSIAFQCLQKLPATNNKFTYNCDAHTFNYLVDNGYTYCVVADESIGRQLPMAFLERVKDEFVSKYGGGKAATAPANSLNKEFGPKLREHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGDKIELLVDKTENLHNQAQDFRTSGTRIRRKMWLQNMKIKLIVLGILIALILIIVLSVCRGFNCGK*

>Glyma09g02310.2   sequence type=predicted peptide   gene model=Glyma09g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQKSLIYAFVSRGTVILAEYTEFSGNFNSIAFQCLQKLPATNNKFTYNCDAHTFNYLVDNGYNESIGRQLPMAFLERVKDEFVSKYGGGKAATAPANSLNKEFGPKLREHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGDKIELLVDKTENLHNQAQDFRTSGTRIRRKMWLQNMKIKLIVLGILIALILIIVLSVCRGFNCGK*







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