Report for Sequence Feature Glyma09g02800
Feature Type: gene_model
Chromosome: Gm09
Start: 1933384
stop: 1937695
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g02800
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G05390 AT
Annotation by Michelle Graham. TAIR10: root FNR 1 | chr4:2738839-2740483 REVERSE LENGTH=378
SoyBase E_val: 0 ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0042651 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: thylakoid membrane
SoyBase N/A ISS
GO:0004324 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ferredoxin-NADP+ reductase activity
SoyBase N/A ISS
GO:0005507 GO-mf
Annotation by Michelle Graham. GO Molecular Function: copper ion binding
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
GO:0050660 GO-mf
Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding
SoyBase N/A ISS
GO:0050661 GO-mf
Annotation by Michelle Graham. GO Molecular Function: NADP binding
SoyBase N/A ISS
KOG0534
KOG
NADH-cytochrome b-5 reductase
JGI ISS
PTHR19384 Panther
NADPH FLAVIN OXIDOREDUCTASE
JGI ISS
PTHR19384:SF1 Panther
FERREDOXIN--NADP REDUCTASE
JGI ISS
PF00175 PFAM
Oxidoreductase NAD-binding domain
JGI ISS
PF00970 PFAM
Oxidoreductase FAD-binding domain
JGI ISS
UniRef100_C6T8Y4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T8Y4_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q41014 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ferredoxin--NADP reductase, root isozyme, chloroplastic n=1 Tax=Pisum sativum RepID=FENR2_PEA
SoyBase E_val: 0 ISS
Expression Patterns of Glyma09g02800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma09g02800
Paralog Evidence Comments
Glyma15g13680 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g02800 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g024100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g02800
Coding sequences of Glyma09g02800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g02800.1 sequence type=CDS gene model=Glyma09g02800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTCATTTGGCCCTGTCTCAGATGGCTGTAACTGTTCCTGTTGGCAGCGATTTGTCTCTCAGAAGATCTGCGGTTAAGGCACCTAACTTTAACTTTTGGGATAAATCATGGGCACCAGTATTTACTTTGTACTTGAAGGCAAACAACTCAAGTTTAAGAAGTCGTCATGTGGTATTCATGTCAGTGCAACAAGCAAGTGTACCCAAAGTTAATGTATCACCTTTAGAGTTGGAAGATGCTAAAGAACCTCCATTGAACTTACACAAGCCTAAAGAACCCTATACAGCAACGATTGTTTCTGTTGATAGGCTAGTGGGACCAAAGGCTCCTGGGGAAACTTGTCATATTGTGATTGATCATGGTGGAAATGTTCCCTACTGGGAAGGACAGAGTTATGGTGTTATTCCACCGGGTGAAAATCCAAAGAAACCTGGGGCTCCTCATAATGTTCGACTATATTCAATTGCTTCTACAAGGTATGGAGACTTTTTTGATGGAAAAACTGCCAGCTTGTGTGTGCGTCGTGCTGTTTATTATGATCCTGAGACAGGAAAGGAAGATCCTTCCAAGAATGGCATATGTAGCAATTTTTTGTGTAATTCAAAGCCTGGAGACAAAATTCAGATCACAGGCCCTTCAGGGAAGATAATGCTTTTACCCGAGGATGACCCAAATGCTACCCATATAATGATTGCCACCGGTACAGGTGTTGCTCCATTCAGAGGCTATCTACGCCGAATGTTCCTGGAATCAGTCCCTACATACAAGTTTGGTGGACTAGCATGGCTTTTCCTTGGAGTTGCCAACACTGACAGTCTTCTCTATGATGAAGAATTCAGCAAATACCTCAATGACTATTCGGACAATTTCCGCTATGATCGAGCCCTCAGCAGAGAACAAAAGAACAAAAATGGGGGCAAAATGTATGTTCAGGATAAGATAGAGGAGTACAGTGATGAAATCTTCAAACTCCTGGATAATGGGGCCCACATTTATTTCTGTGGTCTGAAAGGGATGATGCCTGGGATCCAAGATACACTGAAGAAGGTTGCTGAGCAAAGAGGAGAAAGTTGGGAAGAGAAGCTTTCACAACTTAAGAAGAACAAACAATGGCATGTTGAAGTCTATTGA
Predicted protein sequences of Glyma09g02800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g02800.1 sequence type=predicted peptide gene model=Glyma09g02800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAHLALSQMAVTVPVGSDLSLRRSAVKAPNFNFWDKSWAPVFTLYLKANNSSLRSRHVVFMSVQQASVPKVNVSPLELEDAKEPPLNLHKPKEPYTATIVSVDRLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPHNVRLYSIASTRYGDFFDGKTASLCVRRAVYYDPETGKEDPSKNGICSNFLCNSKPGDKIQITGPSGKIMLLPEDDPNATHIMIATGTGVAPFRGYLRRMFLESVPTYKFGGLAWLFLGVANTDSLLYDEEFSKYLNDYSDNFRYDRALSREQKNKNGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLKGMMPGIQDTLKKVAEQRGESWEEKLSQLKKNKQWHVEVY*