Report for Sequence Feature Glyma09g04640
Feature Type: gene_model
Chromosome: Gm09
Start: 3468708
stop: 3472876
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g04640
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G02790 AT
Annotation by Michelle Graham. TAIR10: polygalacturonase 4 | chr1:610681-612225 REVERSE LENGTH=422
SoyBase E_val: 3.00E-102 ISS
GO:0005975 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0004650 GO-mf
Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity
SoyBase N/A ISS
PF00295 PFAM
Glycosyl hydrolases family 28
JGI ISS
UniRef100_B9RT98 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Exopolygalacturonase clone GBGE184, putative n=1 Tax=Ricinus communis RepID=B9RT98_RICCO
SoyBase E_val: 3.00E-115 ISS
UniRef100_UPI000233B31C UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233B31C related cluster n=1 Tax=unknown RepID=UPI000233B31C
SoyBase E_val: 0 ISS
Expression Patterns of Glyma09g04640
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma09g04640
Paralog Evidence Comments
Glyma15g16240 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g04640 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g041600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g04640
Coding sequences of Glyma09g04640
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g04640.2 sequence type=CDS gene model=Glyma09g04640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCTCTCCTAAGAGAATTGGTGTTCTAATTTTGTGCTTTGCACTGGTTTGCTATGTGGATGCTAAACCAAAAACAAAGCCATTTGCTAGTCCTGATATCTACAAGGGTAAAAATGTAGCTAAGGATGAAATTTCTCCTGGCGAGAAGATAGTTAATGTCATGAGCTTTGGAGCCATACCTGATGGCAAGTTTGACTGCACTCAGGCTTTCATGCATGCATGGAGAGCAGCATGCAAGTCCAATGTGCAAGCCAGGCTTCTGATCCCTAAGGGAAGATTCGTCGTTTCCACGATGTTTTTCGCAGGACCGTGTTTGACTCCAGGGCCTATTACAATCCAAGTTGTAGGCACTGTTGCGGCTACAACAGACATCAGTGAGTATGCGAATGGTGAATGGCTCATGTTTGAGGAACTGGATGGTATAAAGCTTATCGGTGGTGGTACTTTTGATGGCATGGGTAAGGGATCATGGGCAACTGCTGAGAACTGTGAAGCAGATGAATCCAACAATTGCGTCAGAAACCCTAGTAGTATTTATTTCCACAATGTGAGGAATGGAATTATACAGAACATCAAATCCGTAGACCCCAAAGGCTTTCATCTTTTTGTCACTAGCTGTGCTAACATCAGACTCCGATTACTTAAGCTCACTGCACCAGCTACCAGCCCCAACACCGATGGAATTCATATTAGCAACTCCATCGATGTAAAATTATCCAAAAATATCATTGAAACTGGAGATGATTGTGTTTCCATGATACAAGGAGTCAACAATGTTACTATCAACAAACTGAAATGTGGCCCTGGACACGGTATCAGTATTGGAAGTCTTGGAAAGTATCCGGAAGAGCAAGAAGTGAAAGACATTCGTGTCAAGAACTGCACGATGGTTGGCACAACGAATGGCCTCAGAATCAAGACATGGCCTGATAAGTATCCAGGTGCTGCATCAGATATCACCTTCGGTGACATTGTCATGGACAAGGTTAAAAATCCTATCATCATTGACCAAGAGTATGAATGCGAACCGGCAAACTGCAAAAAGAAGCCTTCACTTGTAAATATAAAAGATGTTGTTTTTTCAAACATAAGGGGAACCACAATTTCACCAATTGCAGTGGATTTAAGGTGTAGCAAGCAGTTCCCATGCCAAGATATTAAACTTCAGAACATAGACCTGAACCTTGGACCCAAGCCTTCCGGTTCTAGATGTGCCAATATAAAACCAATCTATACGGGTGTTCAAAGGCCAGCAGCTTGCCTATAA
Predicted protein sequences of Glyma09g04640
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g04640.2 sequence type=predicted peptide gene model=Glyma09g04640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASPKRIGVLILCFALVCYVDAKPKTKPFASPDIYKGKNVAKDEISPGEKIVNVMSFGAIPDGKFDCTQAFMHAWRAACKSNVQARLLIPKGRFVVSTMFFAGPCLTPGPITIQVVGTVAATTDISEYANGEWLMFEELDGIKLIGGGTFDGMGKGSWATAENCEADESNNCVRNPSSIYFHNVRNGIIQNIKSVDPKGFHLFVTSCANIRLRLLKLTAPATSPNTDGIHISNSIDVKLSKNIIETGDDCVSMIQGVNNVTINKLKCGPGHGISIGSLGKYPEEQEVKDIRVKNCTMVGTTNGLRIKTWPDKYPGAASDITFGDIVMDKVKNPIIIDQEYECEPANCKKKPSLVNIKDVVFSNIRGTTISPIAVDLRCSKQFPCQDIKLQNIDLNLGPKPSGSRCANIKPIYTGVQRPAACL*