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Report for Sequence Feature Glyma09g07980

Feature Type:gene_model
Chromosome:Gm09
Start:6983469
stop:6999967
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G06210AT Annotation by Michelle Graham. TAIR10: binding | chr2:2429108-2436588 REVERSE LENGTH=1091 SoyBaseE_val: 0ISS
GO:0000003GO-bp Annotation by Michelle Graham. GO Biological Process: reproduction SoyBaseN/AISS
GO:0000085GO-bp Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle SoyBaseN/AISS
GO:0000398GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006325GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin organization SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0006346GO-bp Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007131GO-bp Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination SoyBaseN/AISS
GO:0008284GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation SoyBaseN/AISS
GO:0009630GO-bp Annotation by Michelle Graham. GO Biological Process: gravitropism SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009910GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development SoyBaseN/AISS
GO:0010090GO-bp Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis SoyBaseN/AISS
GO:0010638GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0016571GO-bp Annotation by Michelle Graham. GO Biological Process: histone methylation SoyBaseN/AISS
GO:0016572GO-bp Annotation by Michelle Graham. GO Biological Process: histone phosphorylation SoyBaseN/AISS
GO:0016579GO-bp Annotation by Michelle Graham. GO Biological Process: protein deubiquitination SoyBaseN/AISS
GO:0030422GO-bp Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0031048GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA SoyBaseN/AISS
GO:0033044GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0043687GO-bp Annotation by Michelle Graham. GO Biological Process: post-translational protein modification SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0051276GO-bp Annotation by Michelle Graham. GO Biological Process: chromosome organization SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
KOG2002 KOG TPR-containing nuclear phosphoprotein that regulates K(+) uptake JGI ISS
PTHR14027Panther TPR REPEAT NUCLEAR PHOSPHOPROTEIN/CTR9 JGI ISS
PF00515PFAM Tetratricopeptide repeat JGI ISS
UniRef100_B9MSY1UniRef Annotation by Michelle Graham. Most informative UniRef hit: PAF1 complex component (Fragment) n=1 Tax=Populus trichocarpa RepID=B9MSY1_POPTR SoyBaseE_val: 0ISS
UniRef100_UPI0002337B9AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337B9A related cluster n=1 Tax=unknown RepID=UPI0002337B9A SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma15g19450 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g068600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma09g07980.1   sequence type=CDS   gene model=Glyma09g07980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCCGTGTACATACCGGTGCAGAATTCGGAGGAGGAGGTTAGGGTTGCTCTCGACCAGCTTCCGAGGGACGCCTCCGACATCCTCGACATCCTCAAGGCGGAACAAGCCCCTCTCGATCTCTGGCTCGTCATTGCGAGGGAGTACTTCAAGCAGGGAAAAATTGATCAATTTCGCCAGATTTTGGAGGAAGGGTCCAGTCCAGAAATTGATGACTATTATGCTGATGTCAGATATGAGAGGATTGCTATCTTAAATGCCCTTGGAGCTTACTACAGCTACCTTGGAAAAATAGAGACGAAACAAAGAGAAAAGGAGGAGCATTTCATTTTGGCAACACAGTATTACAATAAAGCATCTAGGATTGACATGCACGAGCCCTCCACTTGGGTTGGGAAAGGTCAGCTTTTGCTAGCAAAGGGTGAAGTAGAACAGGCATCTGCTGCATTTAAGATTGTGTTAGATGGAGACCGTGATAATGTTCCTGCTCTTTTGGGCCAGGCATGTGTTGAGTTCAACCGCGGACGATATTCTGATTCACTTGAGTTGTATAAGAGAGCGTTGCTAGTGTATCCTGATTGCCCAGCAGCTGTGAGACTTGGCATAGGTCTATGTCGCTACAAATTAGGTCAATTTGAGAAAGCTCAACAGGCATTTGAACGTGTTTTACAGCTAGATCCAGAAAATGTTGAGGCTCTTGTTGCCCTTGCTATAATGGATTTGCGTACTAATGAAGCTACTGGAATCAGGACGGGAATGGTAAAAATGCAGAGGGCATTTGAGATATACCCATACTGTGCAATGGCTCTGAATTATCTTGCAAATCATTTCTTCTTCACTGGACAGCATTTTTTAGTAGAACAACTGACTGAAACTGCATTGGCTGTTACCAACCATGGCCCAACAAAGTCTCACTCTTACTACAATTTAGCACGTTCATATCATAGCAAGGGAGACTATGACAAAGCTGGGGTGTATTACATGGCATCCGTCAAGGAAGTCAACAAGCCCCATGAATTTGTGTTTCCTTATTATGGTTTGGGACAAGTGCAGATAAAGTTGGGAGATTTTAAAAGTGCACTCTCAAACTTTGAAAAGGTCTTGGAAGTGTACCCAGATAATTGTGAGACATTGAAAGCGCTTGGGCATATATATGTTCAACTTGGTCAAACTGACAAGGGCCAGGACTTTATTAGGAAAGCTACAAAAATTGATCCCCGTGATGCCCAGGCGTTTCTTGAGCTGGGAGAATTGTTAATTCTTTCTGACACGGGAGCTGCACTGGATGCATTCAAAACTGCTCGTACTCTATTTAAGAAGGGAGGTCAAGAAGTACCAATTGAATTACTCAATAATATTGGTGTGCTTCAGTTTGAAAGGGGGGAATTTGAGCTTGCTCAACAAACATTTAAGGAGGCACTAGGTGATGGTGTTTGGCTATCTTTCATCAACGAGGAAAAGAAGTCTTCCATTGATGCTGCTACTTCTACTCTTCAATTCAAGGACATGAAATTATTTCATGACCTTGAAAGCAATGGTCACCATGTGGAAGTTCCTTGGGATAAAGTCACTGTACTCTTTAACTTGGCTAGGTTACTTGAGCAGTTAAATGATTCTGGAACTGCAAGCATATTGTATCGCCTTGTCTTGTTCAAGTATCCTGACTATATTGATGCGTATCTGAGGCTAGCTGCAATTGCAAAAGCTCGGAACAACATTCTGTTAAGCATTGAACTGGTTAATGATGCCTTGAAGGTGAATAACAAGTGTCCCAATGCATTATCTATGCTTGGTGAGTTGGAGTTGAAAAATGATGATTGGGTGAAGGCAAAAGAAACTCTCCGCGCGGCTAGTGATGCAACTGAAGGCAAGGACTCATATGCCTCTCTTTCTCTGGGAAACTGGAACTACTTTGCAGCAGTTCGCAATGAGAAGAGAAATCCGAAGCTAGAAGCTACTCATTTGGAAAAGGCCAAAGAACTTTATACCAGAGTTCTGATTCAGCATTCTTCTAATTTATATGCTGCCAATGGTGCTGCGGTAGTCTTAGCTGAAAAGGGCCATTTTGATGTGTCAAAGGATATCTTTACCCAGGTTCAAGAAGCTGCCAGTGGTAGTGTTTTTGTCCAGATGCCTGATGTTTGGATAAATCTGGCGCATGTTTATTTTGCTCAGGGGAATTTTACTTTGGCTGTGAAAATGTATCAAAATTGCTTGCGGAAGTTTTATCACAACACAGACTCTCAAATACTTCTATATTTAGCTCGTACACATTACGAGGCTGAACAGTGGCAAGACTGTATAAAAACTCTACTGAGAGCCATACATTTGGCGCCCTCAAACTATACCTTAAGGTTTGATGCAGGGGTTGCAATGCAAAAGTTTTCAGCATCAACACTACAAAAGGCAAAGAGGACTGCAGATGAGGTGAGAGCAACTGTTGCAGAGCTTCAAAATGCTGTTCGTGTATTTAGTCAGTTGTCTGCTGCTTCCAACCTACATATTCACGGGTTTGATGAGAAGAAAATTGACACTCATGTTGGATACTGCAACCACTTACTTTCAGCTGCAAAAGTTCATCTTGAAGCAGCTGAACGTGAAGAGCAGCAAGTACGGCAGAGACAAGAACTTGCTCGTCAGGTTGCATTTGCTGAGGAAGCCCGTCGAAAGGCTGAAGAGCAAAGGAAATTTCAGATGGAAAGGAGAAAACAAGAGGATGAACTAAAGCGAGTGCAACAACAGGAGGAACATTTTAGGCGTGTTAAGGAGCAATGGAAGAGCAGCAGTCATTCAAAACGGAGAGAAAGATCAGATGATGAAGAGGGAGGAGGGACTGGTGAGAAGAAGAGAAAAAAAGGTGGAAAGCGGAGAAAGAAGGATAAGCACTCAAAATCGCGCTATGACACAGAGGAACCCGAAAATGATATGATGGATGAACAGGAAATGGAGGATGAAGAAGCTGACATAAACTACAGAGAGGAGCCCCAAACTCAGATGAATGATGATGCTGAGGAAAATGCTCAGGGTCTTCTTGCAGCAGCTGGGCTTGAAGATTCCGATGCAGATGAGGAAGCGCCTGCACCTTCCTCAAGCATAGCCCGGCGAAGGCAAGCATTATCAGAATCTGATGATGACGAACCATTAATACAAAGGCAGTCAAGTCCAGCAAGAGAAAACTCTGCTGATATGCAGTTGAGTGATGGAGAAATCAGGGATGGGGATAAGACAAATGGAGATGATGGCAGTGAAGAGGAGAAACAATATTAG

>Glyma09g07980.1   sequence type=predicted peptide   gene model=Glyma09g07980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLVIAREYFKQGKIDQFRQILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYSDSLELYKRALLVYPDCPAAVRLGIGLCRYKLGQFEKAQQAFERVLQLDPENVEALVALAIMDLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKSALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELLILSDTGAALDAFKTARTLFKKGGQEVPIELLNNIGVLQFERGEFELAQQTFKEALGDGVWLSFINEEKKSSIDAATSTLQFKDMKLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLNDSGTASILYRLVLFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNNKCPNALSMLGELELKNDDWVKAKETLRAASDATEGKDSYASLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELYTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEREEQQVRQRQELARQVAFAEEARRKAEEQRKFQMERRKQEDELKRVQQQEEHFRRVKEQWKSSSHSKRRERSDDEEGGGTGEKKRKKGGKRRKKDKHSKSRYDTEEPENDMMDEQEMEDEEADINYREEPQTQMNDDAEENAQGLLAAAGLEDSDADEEAPAPSSSIARRRQALSESDDDEPLIQRQSSPARENSADMQLSDGEIRDGDKTNGDDGSEEEKQY*







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