Glyma09g41230 - SoyBase

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Report for Sequence Feature Glyma09g41230

Feature Type:	gene_model
Chromosome:	Gm09
Start:	45917594
stop:	45923361
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g41230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G29690	AT	Annotation by Michelle Graham. TAIR10: MAC/Perforin domain-containing protein \| chr1:10379310-10381861 REVERSE LENGTH=561	SoyBase	E_val: 0	ISS
GO:0000165	GO-bp	Annotation by Michelle Graham. GO Biological Process: MAPK cascade	SoyBase	N/A	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0006955	GO-bp	Annotation by Michelle Graham. GO Biological Process: immune response	SoyBase	N/A	ISS
GO:0008219	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell death	SoyBase	N/A	ISS
GO:0009626	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010310	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process	SoyBase	N/A	ISS
GO:0010337	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of salicylic acid metabolic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0052542	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition	SoyBase	N/A	ISS
PTHR19324	Panther	COMPLEMENT COMPONENT C6-9	JGI		ISS
PTHR19324:SF4	Panther	COMPLEMENT COMPONENT C6	JGI		ISS
PF01823	PFAM	MAC/Perforin domain	JGI		ISS
UniRef100_G7ILM1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MAC/Perforin domain containing protein n=1 Tax=Medicago truncatula RepID=G7ILM1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L716	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L716_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g41230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g41230

Paralog	Evidence	Comments
Glyma18g44690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g41230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g275800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g41230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g41230

Limit To All Plant Sequences

>Glyma09g41230.2   sequence type=CDS   gene model=Glyma09g41230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGAACACGTGGCAGCATTCCACACTGCTACCAACGCTGTGCAAGCATTAAATAGAGGCTTTGATGTGAACTGCGATACGAGGTTGCTGTATTGCAAACGAGTGGCAGGGTCTAGGGGACTTGTGGTTGTTCCCAATGTTTCAATTGACATTGTTCAGAACTCTCAGGAGCATGTGGGGCGTCGCAGTTCTGGAGTCTGTAGTTATCAGGAGATGGTGGAATATTTTAATCAGAAGGCAAATATATCACAAAGCTTTCCTCTTGGGACATTTAATTCTGCGTTTAGCTTCACTGGTTCAAAACACATTGATGCTACTGAGACAAAATCTCTTTCTTCAGATGGGTTTTATTTTCCCCTCGCAAAGGTTCAGCTTATAAACTCCCACTTAATGTTGCAAGAAAATGTCGAAAGGGACATCCCAGTGAATTGGGATCCACCATCCTTGGCAAGCTTTATTGAAAACTTTGGGACACATGTCATTACATCCATAACTATTGGTGGTAAGGATGTTATTTTTTCTAAACAACACCATAGTTCACCTTTGTCAACATTGGAGATAAAGAACTATATTCAAGAAATTGGAAGCCAGAGGTTCTCTGACATCAGTAACCATACAAGTTCACTTCAAACAAAATCCAAGGATAAGGCTATTTTGCAGGTTGTTGATTCCTTTTCATTCAATAATCAAGTGATACACCCTCAACCTGCATCTGGAACTTATCTAAGTGGGAAAGATGTCAGAGTCATTTTCAGAAGGAGAGGAGGAGATGATTTGGAACAAGACCACAGTATGTGGCTCAGAACAGTCTGTTCTTCCCCAGATGTCATTCAGATGACTTTTTGTCCTATAACAGATCTCATTGATGAAGTTCCTGGCAAGGAGCATTTGGCTCACATTATTGGTCTCTATCTTGAATATAAACCTCCCATTGAAGAACTTAGATATTTCTTAGAGTTTCAAATTGCTCACGTTTGGGCTCCTCTTCATGACAGGACTCCTGGACACCGAAGGAAGGAACCTTTGTGTCCATCTTTGCAATTCAGCATAATGGGCCAGAAACTTTATATCACTGTTGGGCGTTTGCAAGTAACCGGCCTACGTCTGTTTCTAGAAGGAAGCAAGCACAATCGGTTGATTGTTCATCTTCAAAACTTATCATCCCTTCCAAAGATCCTTTGGCCATATTGGGACACATACGTAGCCATTGCTCCCAAGTGGCAGGGACCCGTGGAGCAAGACAGCCGGTTTTTCAAGCCTGTTAAGTGGAATAATTTTTTTCATGTGTGCACTGCACTAGTTGAGAATCCTAAAAGGTTCATAGGGGACTCCTTTGGCGTCTATGTGGTTACTGGGGCTCAGCTTGGAGTGTGGAATTTCGGACCACAAAGCGTGTTGTACATGAAGCTCTTGTTTTCAGGGTTACCCGGTTGCACAATCAAAAGATCATTCTGGGATCACACCCCCAACAACCCTGATAACTCGAGCTTTGGTTCCAGAGAGAACAACACCACAGGGAACAAGATGTGCAAGTATGTTGACTTGTCTGAAATGAGCAAAGGGCCACAAGATCCTCCTGGCCATTGGTTAGTTACCAGTGGAAAAAGTTGGTGTTGA

Predicted protein sequences of Glyma09g41230

Limit To All Plant Sequences

>Glyma09g41230.2   sequence type=predicted peptide   gene model=Glyma09g41230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEHVAAFHTATNAVQALNRGFDVNCDTRLLYCKRVAGSRGLVVVPNVSIDIVQNSQEHVGRRSSGVCSYQEMVEYFNQKANISQSFPLGTFNSAFSFTGSKHIDATETKSLSSDGFYFPLAKVQLINSHLMLQENVERDIPVNWDPPSLASFIENFGTHVITSITIGGKDVIFSKQHHSSPLSTLEIKNYIQEIGSQRFSDISNHTSSLQTKSKDKAILQVVDSFSFNNQVIHPQPASGTYLSGKDVRVIFRRRGGDDLEQDHSMWLRTVCSSPDVIQMTFCPITDLIDEVPGKEHLAHIIGLYLEYKPPIEELRYFLEFQIAHVWAPLHDRTPGHRRKEPLCPSLQFSIMGQKLYITVGRLQVTGLRLFLEGSKHNRLIVHLQNLSSLPKILWPYWDTYVAIAPKWQGPVEQDSRFFKPVKWNNFFHVCTALVENPKRFIGDSFGVYVVTGAQLGVWNFGPQSVLYMKLLFSGLPGCTIKRSFWDHTPNNPDNSSFGSRENNTTGNKMCKYVDLSEMSKGPQDPPGHWLVTSGKSWC*

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