SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma10g27660

Feature Type:gene_model
Chromosome:Gm10
Start:36410162
stop:36413011
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G35830AT Annotation by Michelle Graham. TAIR10: aconitase 1 | chr4:16973007-16977278 REVERSE LENGTH=795 SoyBaseE_val: 2.00E-134ISS
GO:0000302GO-bp Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species SoyBaseN/AISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006101GO-bp Annotation by Michelle Graham. GO Biological Process: citrate metabolic process SoyBaseN/AISS
GO:0006102GO-bp Annotation by Michelle Graham. GO Biological Process: isocitrate metabolic process SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0006972GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic response SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0007033GO-bp Annotation by Michelle Graham. GO Biological Process: vacuole organization SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0010039GO-bp Annotation by Michelle Graham. GO Biological Process: response to iron ion SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0055072GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0003994GO-mf Annotation by Michelle Graham. GO Molecular Function: aconitate hydratase activity SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0048027GO-mf Annotation by Michelle Graham. GO Molecular Function: mRNA 5'-UTR binding SoyBaseN/AISS
GO:0051539GO-mf Annotation by Michelle Graham. GO Molecular Function: 4 iron, 4 sulfur cluster binding SoyBaseN/AISS
PTHR11670Panther ACONITASE JGI ISS
PTHR11670:SF1Panther 3-ISOPROPYLMALATE DEHYDRATASE SUBUNIT JGI ISS
PF00330PFAM Aconitase family (aconitate hydratase) JGI ISS
UniRef100_B9SXB6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Aconitase, putative n=1 Tax=Ricinus communis RepID=B9SXB6_RICCO SoyBaseE_val: 3.00E-136ISS
UniRef100_I1LI49UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LI49_SOYBN SoyBaseE_val: 2.00E-143ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma10g27660.1   sequence type=CDS   gene model=Glyma10g27660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTAATTTAGAATACCTTGGTAGAGTTGTGTTCAACATAAATGGTGTGCTTTATCCTGACAGCGTTGTTGGAACTGATTCACACATAACTATGATTGATGGCCTGGGTGTTGCTAGATGGGGAGTTGGTGGAATAGAAGCAGAAGCTGCAATGCTTGGCCAGCCCATGAGCATGGTCCTACCTGGTGTCGTTGGGTTCAAACTATTATGCAAACTACGAGATGGTGTCACAGCTACTAACTTGGTGTTGACTGTTACACAAATGCTAAGAAAGCATGGGGTTGTTGGCAAGTTTGTAGAGTTTTATGGGGAAGGCATGAGTGAACTGTCTTTGGCAGATCGTGCCACCATAGCAAACATGTCTCCTGAATACATCACTGAGTATGGTGCAACCATGCGCTTCTTTGTTGTGGATCATGTCACTTTCCAATATTTGAGACTAATTTCTAGAAGTGATGAGACTGTAAAATCCTACTTACGAGCAAATAAGATGTTTGTGGATTACAACGAGACAATGTACTCATCGTATTTGGAACTCAATCTTCAGGATGTAGAACCTTGTGTCTCAAGTCCTAAAAGTGTGCATGTTTTGGCCCCTTACTTCATGGGGATCTGTGACCAGGAAGATTTTACTGTACCAAAAGAATCTCAGAATAAGGTTGCAGCATTCACATTCCAAGGGACACCAGCACATCTTAGGCACGGTGATGTTGTTATAGCTGCTATCATCACCAGTTGTACAAATACTTCAAATCCTAGCGTAATGCTTGGAGTTGCATTGGTTGCAAAGAAAGCATGTGAATTTGAGGGCCGAATTCACCCATTAACAAGATCTAATTATCTTTCTTCTCCTCCTCTTGTTGTTGTCTATGCTCTTGCTGGCACA

>Glyma10g27660.1   sequence type=predicted peptide   gene model=Glyma10g27660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
VNLEYLGRVVFNINGVLYPDSVVGTDSHITMIDGLGVARWGVGGIEAEAAMLGQPMSMVLPGVVGFKLLCKLRDGVTATNLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYITEYGATMRFFVVDHVTFQYLRLISRSDETVKSYLRANKMFVDYNETMYSSYLELNLQDVEPCVSSPKSVHVLAPYFMGICDQEDFTVPKESQNKVAAFTFQGTPAHLRHGDVVIAAIITSCTNTSNPSVMLGVALVAKKACEFEGRIHPLTRSNYLSSPPLVVVYALAGT







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo