Report for Sequence Feature Glyma10g28250
Feature Type: gene_model
Chromosome: Gm10
Start: 37123335
stop: 37125928
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g28250
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G09540 AT
Annotation by Michelle Graham. TAIR10: myb domain protein 61 | chr1:3086333-3087689 FORWARD LENGTH=366
SoyBase E_val: 6.00E-113 ISS
GO:0001944 GO-bp
Annotation by Michelle Graham. GO Biological Process: vasculature development
SoyBase N/A ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009733 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus
SoyBase N/A ISS
GO:0010089 GO-bp
Annotation by Michelle Graham. GO Biological Process: xylem development
SoyBase N/A ISS
GO:0010119 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement
SoyBase N/A ISS
GO:0010214 GO-bp
Annotation by Michelle Graham. GO Biological Process: seed coat development
SoyBase N/A ISS
GO:0016132 GO-bp
Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process
SoyBase N/A ISS
GO:0044036 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process
SoyBase N/A ISS
GO:0048364 GO-bp
Annotation by Michelle Graham. GO Biological Process: root development
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
KOG0048
KOG
Transcription factor, Myb superfamily
JGI ISS
PTHR10641 Panther
MYB-RELATED
JGI ISS
PF00249 PFAM
Myb-like DNA-binding domain
JGI ISS
UniRef100_G7IAD1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: R2R3-MYB transcription factor n=1 Tax=Medicago truncatula RepID=G7IAD1_MEDTR
SoyBase E_val: 2.00E-142 ISS
UniRef100_I1LAY2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAY2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g28250
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma10g28250
Paralog Evidence Comments
Glyma20g22230 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g28250 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g142200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g28250
Coding sequences of Glyma10g28250
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g28250.1 sequence type=CDS gene model=Glyma10g28250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAAGACACTCTTGTTGCTACAAACAGAAGTTACGGAAAGGCCTTTGGTCTCCAGAGGAAGACGAGAAGCTTCTCAATCACATCACCAAACATGGTCATGGATGTTGGAGCTCGGTTCCCAAACTAGCTGGTTTGCAGAGATGTGGGAAGAGCTGCAGGTTGAGGTGGATAAATTATCTAAGGCCTGATTTGAAGAGAGGAGCATTCTCACAGCAAGAAGAGAACATGATTGTTGAACTTCATGCAGTTCTTGGAAACAGGTGGTCTCAGATTGCAGCACAGTTACCAGGAAGAACAGACAATGAGATTAAGAACCTATGGAACTCGTGCCTGAAGAAGAAGCTGAGGCAAAGAGGCATTGACCCAACCACACACAAGCCACTCTCTGAGGTTGAGAACGACAAGGACATGAATATGATGCCACCCTCAACCGACAAAAGCACTCAGAAAGCCTCTGTGGGATCCAATGAAGTAGTGAGTAATTTGGTTGATCATCATCAGCCACCAAAAACCATGCCTAATTCTTCATCAGAGAGATACCCTCTTGAAGTTTCCACTACTAGTTCCACCCAGGAACTGTTCCTAGATAGGTTTGGCACCACCACCACCACCTGCCACGAAAACAACAACAACACTTCTGATTTGGTAGGATCATACTTCTCCTTCCAGCACTTGAACTATGGAACAACAACAAGCATGGCCCTCTCTTCAAACCCCAACACCTCTCTTTGTTTCATTCTACCCTCCACTTCTTCAGACATTAATAATAACAACTCCATCATAACCTCCTCCTCCATGCTCCCTTCAATTTTCCCAACACAACATGTGAAGCTCCAATCTAATAACAACAACCCTTCTTCCATTTCATCTGATGGGGTTCAAAACTGGGAAACAAGTAACAACACAAACAAAAACAATGGGAATATGCAGTTACAAAGTAGCACAAACTACCTTGACAGCACGTGGGGGGTGGCAGAGTCTATGAAGATTGTTAACATTAACAAAGAGGCTCAAGTAGTGCCTCTACAAGCAGAACAAGAAGATCTAAAATGGTCTGAGTATCTTAACACCCCGTTTATTCTGGGAAACAACACAACGCAGAATCATCAAATTCAAACCTCTCAATCTATCTACACTGAGGTTATTAAACCAGAAACAGGTTTCATAATAGACGAGTCATGTACTAGTAATTGGCACCATCATCAGCCACCACCAGCTTTTCAACTTTCCGATATATATAGCAAGGATCTGCAGAGATTTTCAGTGACTTTCGGACAAACCCTGTAA
Predicted protein sequences of Glyma10g28250
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g28250.1 sequence type=predicted peptide gene model=Glyma10g28250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGRHSCCYKQKLRKGLWSPEEDEKLLNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENMIVELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPTTHKPLSEVENDKDMNMMPPSTDKSTQKASVGSNEVVSNLVDHHQPPKTMPNSSSERYPLEVSTTSSTQELFLDRFGTTTTTCHENNNNTSDLVGSYFSFQHLNYGTTTSMALSSNPNTSLCFILPSTSSDINNNNSIITSSSMLPSIFPTQHVKLQSNNNNPSSISSDGVQNWETSNNTNKNNGNMQLQSSTNYLDSTWGVAESMKIVNINKEAQVVPLQAEQEDLKWSEYLNTPFILGNNTTQNHQIQTSQSIYTEVIKPETGFIIDESCTSNWHHHQPPPAFQLSDIYSKDLQRFSVTFGQTL*