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Report for Sequence Feature Glyma10g32070

Feature Type:gene_model
Chromosome:Gm10
Start:40517954
stop:40520086
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g32070
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G44390AT Annotation by Michelle Graham. TAIR10: FAD-binding Berberine family protein | chr5:17882329-17884906 REVERSE LENGTH=542 SoyBaseE_val: 1.00E-135ISS
GO:0006865GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid transport SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0008762GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016614GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors SoyBaseN/AISS
GO:0050660GO-mf Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding SoyBaseN/AISS
KOG1231 KOG Proteins containing the FAD binding domain JGI ISS
PTHR11748Panther D-LACTATE DEHYDROGENASE JGI ISS
PTHR11748:SF29Panther SUBFAMILY NOT NAMED JGI ISS
PF01565PFAM FAD binding domain JGI ISS
PF08031PFAM Berberine and berberine like JGI ISS
UniRef100_G7L6C2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Reticuline oxidase n=1 Tax=Medicago truncatula RepID=G7L6C2_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1LC19UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LC19_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g32070
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g32070
ParalogEvidenceComments
Glyma20g35570 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g32070 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g177100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g32070
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g32070
>Glyma10g32070.1   sequence type=CDS   gene model=Glyma10g32070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTACTTCCTCAAAAGATTGTGCCTTTTATGTTTCCTCTTGCTATCCTTTGATGTTTCACTGTGTTCATGTGCTTCACTCAGAGACTTGGCTTCTTGCTTGGATAATCACGATATCAAAAACTTTACCACGCTCCCTTACAAAGAACATGATCATTCCTCTGCCTATAATTACTACAAAATTCTCAATTTTTCCATCCAAAACCTTCGGTTCGCAGAACCCGTGATTCCTAAGCCGATAGCCATTGTACTGCCAGAGAGTTTGGAGCAGCTGCAGAAAAGTGTAGCATGCTGTAGAGAAGGCTTCATGGAAATAAGAGTAAGATGTGGTGGACACAGCTATGAAGGGACTTCATATGTTGCTGATGATGGCACTCCTTTTGTCATCATTGACATGATGAATTTGAACCATGTTTGGGTGGACATGGAGACAGAAACAGCATGGGTTGAAGGTGGTGCAACATTGGGAGAGACTTACTATGCAATCTCTCAGGCAAGCAATGAACATGGATTCTCAGGTGGGTCATGTCCAACTGTTGGAGTTGGAGGACACATTGGTGGTGGTGGATTTGGAATTTTGTCTAGAAAGTATGGTCTCGCGGCAGATAACGTGGTGGATGCCCTTCTAGTCAATGCTGACGGAAAATTGTTCGACCGCGAAACCATGGGAGAAGATGTGTTTTGGGCCATTAGAGGAGGAGGAGGTGGTCTTTGGGGGATCATTTATGCCTGGAAAATCAAGGTGTTGAAATTGCCTCAAGTTGTAACTAGTTTCACTGTATCAAGAACTGGCACAAAAAGGCATGTTGCCAATCTAGTGCACAAATGGCAAAATGTAGCACCAAACTTGGAAGATGACTTCTACTTGTCATGCTTTGTTGGTGCTGGCTTGCCTCAAGCTAAAACCAAAGGGTTATCAACAACATTTAACGGCTTCTATCTCGGTCCTAGGGCCGGTGCCATATCCATCCTAGACCATGCCTTTCCTGAGTTGGGTATTGTAGAAGAAGAATGCATAGAAATGAGTTGGATTCAGTCAACTGTTTTCTTCTCTGGCCTAAGTGATGGAGCCTCGGTCTCTGACTTGAACAACAGGTATCTGCAAGAAAAACAATATTTCAAGGCTAAATCAGATTATGTAAAGAAACATGTTCCTCTTGTGGGCATAGAAACTGCACTAGACATCCTAGAAAAGGAGCCTAAGGGATATGTTATTTTGGACCCTTATGGTGGAAAGATGCATAATATAAGCAGTGAATCTATTGCTTTTCCCCACAGAAGAGGAAACTTGTTTACAATTCAGTATCTGATATATTGGAAAGAAGCTGACAATGACAAAAACAGTGATTATGTTGATTGGATAAGAGGGTTCTATGCTGCTATGACTCCCTTTGTCTCATGGGGTCCAAGGGCTGCGTATGTTAATTACATGGACTTTGACCTTGGAGTGATGGAGCGGATTAGCAATGGTGCTAATATGAAAGATGTTGTGGAACATGCAAGGGTTTGGGGTGAAAAGTACTTCTTGAGTAACTATGACAGGTTGGTGAGGGCCAAGACTCTGATTGATCCTAACAATGTTTTCACCAATGACCAGGGCATTCCTCCCATATCTTTGACCATTTCTGATGTCAAACCACAGAGCAAATAA
Predicted protein sequences of Glyma10g32070
>Glyma10g32070.1   sequence type=predicted peptide   gene model=Glyma10g32070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFYFLKRLCLLCFLLLSFDVSLCSCASLRDLASCLDNHDIKNFTTLPYKEHDHSSAYNYYKILNFSIQNLRFAEPVIPKPIAIVLPESLEQLQKSVACCREGFMEIRVRCGGHSYEGTSYVADDGTPFVIIDMMNLNHVWVDMETETAWVEGGATLGETYYAISQASNEHGFSGGSCPTVGVGGHIGGGGFGILSRKYGLAADNVVDALLVNADGKLFDRETMGEDVFWAIRGGGGGLWGIIYAWKIKVLKLPQVVTSFTVSRTGTKRHVANLVHKWQNVAPNLEDDFYLSCFVGAGLPQAKTKGLSTTFNGFYLGPRAGAISILDHAFPELGIVEEECIEMSWIQSTVFFSGLSDGASVSDLNNRYLQEKQYFKAKSDYVKKHVPLVGIETALDILEKEPKGYVILDPYGGKMHNISSESIAFPHRRGNLFTIQYLIYWKEADNDKNSDYVDWIRGFYAAMTPFVSWGPRAAYVNYMDFDLGVMERISNGANMKDVVEHARVWGEKYFLSNYDRLVRAKTLIDPNNVFTNDQGIPPISLTISDVKPQSK*






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