Report for Sequence Feature Glyma10g35560
Feature Type: gene_model
Chromosome: Gm10
Start: 43811807
stop: 43822301
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g35560
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G48850 AT
Annotation by Michelle Graham. TAIR10: chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative | chr1:18065154-18067956 REVERSE LENGTH=436
SoyBase E_val: 0 ISS
GO:0006499 GO-bp
Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation
SoyBase N/A ISS
GO:0006865 GO-bp
Annotation by Michelle Graham. GO Biological Process: amino acid transport
SoyBase N/A ISS
GO:0009073 GO-bp
Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process
SoyBase N/A ISS
GO:0009611 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to wounding
SoyBase N/A ISS
GO:0009793 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy
SoyBase N/A ISS
GO:0009805 GO-bp
Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process
SoyBase N/A ISS
GO:0005730 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleolus
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009536 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plastid
SoyBase N/A ISS
GO:0009570 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma
SoyBase N/A ISS
GO:0004107 GO-mf
Annotation by Michelle Graham. GO Molecular Function: chorismate synthase activity
SoyBase N/A ISS
KOG4492
KOG
Chorismate synthase
JGI ISS
PTHR21085 Panther
CHORISMATE SYNTHASE
JGI ISS
PF01264 PFAM
Chorismate synthase
JGI ISS
UniRef100_I1LD16 UniRef
Annotation by Michelle Graham. Best UniRef hit: Chorismate synthase n=1 Tax=Glycine max RepID=I1LD16_SOYBN
SoyBase E_val: 0 ISS
UniRef100_I1LD16 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Chorismate synthase n=1 Tax=Glycine max RepID=I1LD16_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g35560
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma10g35560
Paralog Evidence Comments
Glyma20g31980 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g35560 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g211400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g35560
Coding sequences of Glyma10g35560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g35560.1 sequence type=CDS gene model=Glyma10g35560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCTTCTCTCTCCACCAAACCATTCTCATCAACCGACGCTCTCTCCGCCTTCGCTTCTCTCAATCCCGATCTCCGATCCTTCTCCCCCGGCTACCTCCGTCTCTCACTCCGTCCTCGTCTTCCCAAGAGACTTCAGATACGGGCTGCTGGGAGTATCTATGGAAATCACTTTCGTGTTTCAACATATGGAGAATCGCATGGAGGAGGTGTTGGTTGTATTATTGATGGATGTCCTCCTCACCTTCCTCTCTCCGAAGCTGATATGCAATTGGATCTTGACAGAAGGAGGCCAGGTCAGAGCCGAATTACAACTCCTAGAAAGGAGACTGATACATGTAAAATATTTTCAGGAGTTTCTGAAGGACTTACTACTGGAACTCCAATTCATGTATTTGTACCCAATACTGATCAAAGAGGACATGACTATACTGAGATGGCAGTAGCTTATAGGCCTTCCCATGCAGATGCTACCTATGACATGAAGTATGGTGTCAGATCCGTTCAGGGTGGTGGTAGATCTTCTGCAAGAGAAACAATTGGAAGGGTTGCTTCTGGTGCTGTTGCTAAGAAAATCCTTAAAGACTTTTCTGGAACTGAGATTCTTGCCTATGTCTCTCAAGTTTATAATATTGTTCTTCCAGAGGACCTTATTGATCATGACACTCTGACTCTTGATCAGATTGAGAGTAACATTGTTCGATGTCCAGACCCGGAATATGCAGAGAAGATGATATCTGCAATTGATGCTGTGCGAGTGAGAGGTGATTCTGTTGGTGGTGTTGTAACATGCATTGTGAGGAACTGTCCACGTGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCTGCTATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGGCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCCCGTGGTCGCCATGATCCTTGTGTTGTCCCAAGAGCTGTACCTATGGTAGAGGCAATGGTAGCTTTGGTTCTTGTGGACCAATTGATGGCACAATATGCGCAGTGTAATCTGTTTCCCGTAAACTCAGATTTGCAAGAACCCCTGGTGCCCATATTACGGCCAGAAGAAGCGCTTCTCTGA
Predicted protein sequences of Glyma10g35560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g35560.1 sequence type=predicted peptide gene model=Glyma10g35560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASSLSTKPFSSTDALSAFASLNPDLRSFSPGYLRLSLRPRLPKRLQIRAAGSIYGNHFRVSTYGESHGGGVGCIIDGCPPHLPLSEADMQLDLDRRRPGQSRITTPRKETDTCKIFSGVSEGLTTGTPIHVFVPNTDQRGHDYTEMAVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVASGAVAKKILKDFSGTEILAYVSQVYNIVLPEDLIDHDTLTLDQIESNIVRCPDPEYAEKMISAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAAMSLPATKGFQFGSGFAGTFLTGSEHNDEFYIDEHGNTRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGKKQNTVTRDKKETEFIARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYAQCNLFPVNSDLQEPLVPILRPEEALL*