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Report for Sequence Feature Glyma11g16050

Feature Type:gene_model
Chromosome:Gm11
Start:11720862
stop:11722851
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G16770AT Annotation by Michelle Graham. TAIR10: Basic-leucine zipper (bZIP) transcription factor family protein | chr2:7279859-7280817 FORWARD LENGTH=249 SoyBaseE_val: 1.00E-48ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0010043GO-bp Annotation by Michelle Graham. GO Biological Process: response to zinc ion SoyBaseN/AISS
GO:0071294GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to zinc ion SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PF07716PFAM Basic region leucine zipper JGI ISS
UniRef100_D6MKB2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor (Fragment) n=1 Tax=Lycoris longituba RepID=D6MKB2_9ASPA SoyBaseE_val: 5.00E-51ISS
UniRef100_I1LKF3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LKF3_SOYBN SoyBaseE_val: 1.00E-180ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.U018600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma11g16050.6   sequence type=transcript   gene model=Glyma11g16050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGACCACTCTCACTGCTCATGTCAATGGAAGAACAGTTCCACATTTTGTATCATAGAGTACTTTGACTTACTCTTTACACAGAAATTAAGGCCAAAGAACAATCTCGAGCAACAAACTTCCATTATGCTCATCTCATCCATTACCATGGGCTAAAAGCTAGCAAGTAGAAACCATCATGTTTCTGGTGCCACCAAGGGCCAGATACACTTTTTTTTCTGTTGAGAGATTGCAGCTGAATTTCATTGGGGGGTGCAGAAAGAAAACATGGATGATGGAAATGCTGAGCTTTCTGATAAGCTTTCAGATAATAATGTTCTATTTTTGAATCCAGAGTCATGTAGCAGTTTTCAGGCTTCAAGTAGCAGCAGAACATGCACACACACTCACACTTGCAATCCACCTGGCCCTGATGCTGCTCATACACACACATGCTATCACACACACACCCAAGTTTTTGCACCAGAAGATGATGGCAGGAAGCACTCAAACTCCAAGCAAAAAAGGCCTTCTGGAAACCGAGAAGCGGTTAGGAAGTATAGGGAGAAGAAGAAGGCACACACAGCATACTTGGAGGAGGAAGTTAAGAAATTGCATATGGTGAATCAACAACTAGTGAGGAAGCTACAAGGGCAGGCACTTCTTGAAGCAGAATTAGCAAGGTTGAGGAGCATTTTGGCACGACTTAAGGGGAAAATAGACAGTGAATTGGGTGCTTGGCCCTTTCAAAAACAATATTGTAACACTTCTTACATTTTCAAAGAAGGGGATGCTGGTCTTGAGTGTCAGAAGAACAATTTGCCATGCTTCCATCCACATGTAGGATCATCATCCCAGGTCAACATTTGTGCATGTGGAAAATCCATGATTCCATTGGATGGAAACTGCCAACCTGAAATGGTAGATTGCCAAGTAGATGCAAATAACATGACCAGTACTGAAGGACAAACTGTGGATAACATCATGTCATCTGCATCTCAAGACGGATAGTTTAGCCAGACAAAAATGTCTTTCTTGTGAGTTTCTATCCAATTGCTATCACAGATGATTTGTTTGTTTAGCATTTGTAGTTGATAGGTAAGATGAGGTACATAAAAATATAATCACTGTTACCCTAAAAGGTATGTATGTAAGGACCAGCCCAATAGAAAGTGAGACCTAAAGCAAAAAAAAATTGAGAGAGACTTTATCTATGTTAAAGAAAAGAGTGATATGTGTGACCTTTTATTCAACATGTGTGGTCTTTTTTATTTTAAAAAACTAATAACAAATGTTAGGCCTAAAGCTCAAGCTTTACTTGTTTTACCCTTGGGCCGGCCCTATGTTAGATGATTCATAACTTACTCATGAAGTTTGCAATCTGCAATCTATAGGATATGTATACATAGACAAAGTAACAAAGTTCCTTGTGTAATAAGTTTGTCATGATAAAGAAATTAATACTTTTCTCCAGCT

>Glyma11g16050.7   sequence type=transcript   gene model=Glyma11g16050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTCAACATTAAAAAAGTTTTTCCTTTATGCTCAATTCTGTATTATTGGGAAGACAATCCAACTGATACACTTTTTTTTCTGTTGAGAGATTGCAGCTGAATTTCATTGGGGGGTGCAGAAAGAAAACATGGATGATGGAAATGCTGAGCTTTCTGATAAGCTTTCAGATAATAATGTTCTATTTTTGAATCCAGAGTCATGTAGCAGTTTTCAGGCTTCAAGTAGCAGCAGAACATGCACACACACTCACACTTGCAATCCACCTGGCCCTGATGCTGCTCATACACACACATGCTATCACACACACACCCAAGTTTTTGCACCAGAAGATGATGGCAGGAAGCACTCAAACTCCAAGCAAAAAAGGCCTTCTGGAAACCGAGAAGCGGTTAGGAAGTATAGGGAGAAGAAGAAGGCACACACAGCATACTTGGAGGAGGAAGTTAAGAAATTGCATATGGTGAATCAACAACTAGTGAGGAAGCTACAAGGGCAGGCACTTCTTGAAGCAGAATTAGCAAGGTTGAGGAGCATTTTGGCACGACTTAAGGGGAAAATAGACAGTGAATTGGGTGCTTGGCCCTTTCAAAAACAATATTGTAACACTTCTTACATTTTCAAAGAAGGGGATGCTGGTCTTGAGTGTCAGAAGAACAATTTGCCATGCTTCCATCCACATGTAGGATCATCATCCCAGGTCAACATTTGTGCATGTGGAAAATCCATGATTCCATTGGATGGAAACTGCCAACCTGAAATGGTAGATTGCCAAGTAGATGCAAATAACATGACCAGTACTGAAGGACAAACTGTGGATAACATCATGTCATCTGCATCTCAAGACGGATAGTTTAGCCAGACAAAAATGTCTTTCTTGTGAGTTTCTATCCAATTGCTATCACAGATGATTTGTTTGTTTAGCATTTGTAGTTGATAGGTAAGATGAGGTACATAAAAATATAATCACTGTTACCCTAAAAGGTATGTATGTAAGGACCAGCCCAATAGAAAGTGAGACCTAAAGCAAAAAAAAATTGAGAGAGACTTTATCTATGTTAAAGAAAAGAGTGATATGTGTGACCTTTTATTCAACATGTGTGGTCTTTTTTATTTTAAAAAACTAATAACAAATGTTAGGCCTAAAGCTCAAGCTTTACTTGTTTTACCCTTGGGCCGGCCCTATGTTAGATGATTCATAACTTACTCATGAAGTTTGCAATCTGCAATCTATAGGATATGTATACATAGACAAAGTAACAAAGTTCCTTGTGTAATAAGTTTGTCATGATAAAGAAATTAATACTTTTCTCC

>Glyma11g16050.5   sequence type=CDS   gene model=Glyma11g16050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATGGAAATGCTGAGCTTTCTGATAAGCTTTCAGATAATAATGTTCTATTTTTGAATCCAGAGTCATGTAGCAGTTTTCAGGCTTCAAGTAGCAGCAGAACATGCACACACACTCACACTTGCAATCCACCTGGCCCTGATGCTGCTCATACACACACATGCTATCACACACACACCCAAGTTTTTGCACCAGAAGATGATGGCAGGAAGCACTCAAACTCCAAGCAAAAAAGGCCTTCTGGAAACCGAGAAGCGGTTAGGAAGTATAGGGAGAAGAAGAAGGCACACACAGCATACTTGGAGGAGGAAGTTAAGAAATTGCATATGGTGAATCAACAACTAGTGAGGAAGCTACAAGGGCAGGCACTTCTTGAAGCAGAATTAGCAAGGTTGAGGAGCATTTTGGCACGACTTAAGGGGAAAATAGACAGTGAATTGGGTGCTTGGCCCTTTCAAAAACAATATTGTAACACTTCTTACATTTTCAAAGAAGGGGATGCTGGTCTTGAGTGTCAGAAGAACAATTTGCCATGCTTCCATCCACATGTAGGATCATCATCCCAGGTCAACATTTGTGCATGTGGAAAATCCATGATTCCATTGGATGGAAACTGCCAACCTGAAATGGTAGATTGCCAAGTAGATGCAAATAACATGACCAGTACTGAAGGACAAACTGTGGATAACATCATGTCATCTGCATCTCAAGACGGATAG

>Glyma11g16050.6   sequence type=CDS   gene model=Glyma11g16050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATGGAAATGCTGAGCTTTCTGATAAGCTTTCAGATAATAATGTTCTATTTTTGAATCCAGAGTCATGTAGCAGTTTTCAGGCTTCAAGTAGCAGCAGAACATGCACACACACTCACACTTGCAATCCACCTGGCCCTGATGCTGCTCATACACACACATGCTATCACACACACACCCAAGTTTTTGCACCAGAAGATGATGGCAGGAAGCACTCAAACTCCAAGCAAAAAAGGCCTTCTGGAAACCGAGAAGCGGTTAGGAAGTATAGGGAGAAGAAGAAGGCACACACAGCATACTTGGAGGAGGAAGTTAAGAAATTGCATATGGTGAATCAACAACTAGTGAGGAAGCTACAAGGGCAGGCACTTCTTGAAGCAGAATTAGCAAGGTTGAGGAGCATTTTGGCACGACTTAAGGGGAAAATAGACAGTGAATTGGGTGCTTGGCCCTTTCAAAAACAATATTGTAACACTTCTTACATTTTCAAAGAAGGGGATGCTGGTCTTGAGTGTCAGAAGAACAATTTGCCATGCTTCCATCCACATGTAGGATCATCATCCCAGGTCAACATTTGTGCATGTGGAAAATCCATGATTCCATTGGATGGAAACTGCCAACCTGAAATGGTAGATTGCCAAGTAGATGCAAATAACATGACCAGTACTGAAGGACAAACTGTGGATAACATCATGTCATCTGCATCTCAAGACGGATAG

>Glyma11g16050.7   sequence type=CDS   gene model=Glyma11g16050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATGGAAATGCTGAGCTTTCTGATAAGCTTTCAGATAATAATGTTCTATTTTTGAATCCAGAGTCATGTAGCAGTTTTCAGGCTTCAAGTAGCAGCAGAACATGCACACACACTCACACTTGCAATCCACCTGGCCCTGATGCTGCTCATACACACACATGCTATCACACACACACCCAAGTTTTTGCACCAGAAGATGATGGCAGGAAGCACTCAAACTCCAAGCAAAAAAGGCCTTCTGGAAACCGAGAAGCGGTTAGGAAGTATAGGGAGAAGAAGAAGGCACACACAGCATACTTGGAGGAGGAAGTTAAGAAATTGCATATGGTGAATCAACAACTAGTGAGGAAGCTACAAGGGCAGGCACTTCTTGAAGCAGAATTAGCAAGGTTGAGGAGCATTTTGGCACGACTTAAGGGGAAAATAGACAGTGAATTGGGTGCTTGGCCCTTTCAAAAACAATATTGTAACACTTCTTACATTTTCAAAGAAGGGGATGCTGGTCTTGAGTGTCAGAAGAACAATTTGCCATGCTTCCATCCACATGTAGGATCATCATCCCAGGTCAACATTTGTGCATGTGGAAAATCCATGATTCCATTGGATGGAAACTGCCAACCTGAAATGGTAGATTGCCAAGTAGATGCAAATAACATGACCAGTACTGAAGGACAAACTGTGGATAACATCATGTCATCTGCATCTCAAGACGGATAG

>Glyma11g16050.5   sequence type=predicted peptide   gene model=Glyma11g16050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDGNAELSDKLSDNNVLFLNPESCSSFQASSSSRTCTHTHTCNPPGPDAAHTHTCYHTHTQVFAPEDDGRKHSNSKQKRPSGNREAVRKYREKKKAHTAYLEEEVKKLHMVNQQLVRKLQGQALLEAELARLRSILARLKGKIDSELGAWPFQKQYCNTSYIFKEGDAGLECQKNNLPCFHPHVGSSSQVNICACGKSMIPLDGNCQPEMVDCQVDANNMTSTEGQTVDNIMSSASQDG*

>Glyma11g16050.6   sequence type=predicted peptide   gene model=Glyma11g16050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDGNAELSDKLSDNNVLFLNPESCSSFQASSSSRTCTHTHTCNPPGPDAAHTHTCYHTHTQVFAPEDDGRKHSNSKQKRPSGNREAVRKYREKKKAHTAYLEEEVKKLHMVNQQLVRKLQGQALLEAELARLRSILARLKGKIDSELGAWPFQKQYCNTSYIFKEGDAGLECQKNNLPCFHPHVGSSSQVNICACGKSMIPLDGNCQPEMVDCQVDANNMTSTEGQTVDNIMSSASQDG*

>Glyma11g16050.7   sequence type=predicted peptide   gene model=Glyma11g16050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDGNAELSDKLSDNNVLFLNPESCSSFQASSSSRTCTHTHTCNPPGPDAAHTHTCYHTHTQVFAPEDDGRKHSNSKQKRPSGNREAVRKYREKKKAHTAYLEEEVKKLHMVNQQLVRKLQGQALLEAELARLRSILARLKGKIDSELGAWPFQKQYCNTSYIFKEGDAGLECQKNNLPCFHPHVGSSSQVNICACGKSMIPLDGNCQPEMVDCQVDANNMTSTEGQTVDNIMSSASQDG*







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