Report for Sequence Feature Glyma12g06120
Feature Type: gene_model
Chromosome: Gm12
Start: 4172572
stop: 4176118
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g06120
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G19350 AT
Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:6518978-6521295 FORWARD LENGTH=425
SoyBase E_val: 0 ISS
GO:0010048 GO-bp
Annotation by Michelle Graham. GO Biological Process: vernalization response
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
GO:0003723 GO-mf
Annotation by Michelle Graham. GO Molecular Function: RNA binding
SoyBase N/A ISS
GO:0008143 GO-mf
Annotation by Michelle Graham. GO Molecular Function: poly(A) RNA binding
SoyBase N/A ISS
KOG0148
KOG
Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)
JGI ISS
PTHR24012 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24012:SF67 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00076 PFAM
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
JGI ISS
UniRef100_G7IUB4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding protein n=2 Tax=Medicago truncatula RepID=G7IUB4_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000196265F UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000196265F related cluster n=1 Tax=unknown RepID=UPI000196265F
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g06120
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma12g06120
Paralog Evidence Comments
Glyma11g14150 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g06120 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g057300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g06120
Transcripts of Glyma12g06120
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g06120.3 sequence type=transcript gene model=Glyma12g06120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CTTTAAATTCAAAAGCAGCCTCAATCTCACACCAACAACACTAAATAAAAAAAAAGGAGGCTGAAGCATAATCAGCGCGGCGGTGTAAGATGGTGGCAACGGCGATCGAGGAAGTGCGAACCCTCTGGATTGGCGATTTACAGTACTGGGTCGACGAGTCCTACCTCTCTCAGTGCTTCGCCCACAGCGGCGAAGTGGTTTCCATCAAAATCATCCGCAACAAGCTGACGGGCCAGCCCGAGGGCTACGGCTTCGTCGAGTTCGTCTCGCACGCCTCGGCCGAAGCCTTTCTCCGAACCTTCAACGGGGCCCAAATGCCCGGCACGGACCAGACCTTCAGGCTCAATTGGGCCTCGTTCGGGGACTCCGGGCCCGACCACTCCATCTTCGTCGGCGATCTCGCCCCCGACGTCACCGATTTCATCCTCCAGGAGACTTTCCGGGCCCATTATCCCTCCGTTAAAGGGTCCAAAGTCGTCACCGACCCCGCCACGGGCCGCTCCAAGGGCTATGGGTTTGTTAAGTTCGCCGATGAGGCCCAGAGGAACCGCGCCATGACTGAAATGAACGGCGTTTATTGCTCCACGCGCCCAATGCGTATCAGCGCGGCTACTCCTAAGAAGAATGCTTCTTTTCAACACCAATATGCTCCACCTAAAGCAATGTATCAATTTCCTGCATACACTGCTCCAGTGAGTACTGTTGCGCCGGAGAATGATGTGAATAATACCACTGTTTGTATTGGTAATTTGGATCTTAATGTGACGGAGGAGGAGCTTAAGCAAGCCTTTGTGCAATTTGGTGATATTGTGTTGGTCAAAATTTATGCGGGCAAAGGATATGGTTATGTTCAATTTGGAACTAGAGCGTCTGCTGAAGATGCCATTCAGAGGATGCAAGGGAAGGTAATAGGTCAGCAAGTGATCCAAATTTCTTGGGGCAGTACCTTGACAGCTAGACAGGATGTACCCGGTGGCTGGGGTGCACAGATGGATCCAAGTCAATGGAGTGCTTACTACGGATATGGACAGGGTTATGAATCATATGCTTATGGTGCTACTCATGATCCCTCCTTGTATGCTTATGGTGCATATGCCGGTTATGCACAATACCCTCAGAATGTAAGTTTACATACACATGGAAGAGAATGACATTTTTGAGTTACTCATGCATATTGGTTGCTTACTTTTCAGGTTGAAGGTGCTCAAGACATGTCAGCAGTGTCTATGCCTATGGAGGAATTGTATGACCCCCTGGCAATGCCTGATGTCGATAAATTAAATGCTGCATATCTTTCAATACACGGAAGTTCCATTTTAGGGCGGTCCCTTTGGCAGAGAACTTCACAATCTTTACAGCAAGCCTAGGATCTATATGTATTGTCAGGTCAATTTTAGGCATTAAGGCTTCAAAATATGGCTGTCTTACAATTTTGCGTTTGTTTCAACATGAGTGGAAGAGCATGTTAATTAGATCAATGGTAGTATTTTATGATGTAATACTGAATATCAATGATTTTATTTTAGTTTAGGATTTGAGTTTTAATAGTAATCTTGTATTAAAATTTAGATATGATGTCATAAGGATATTGTGTCGTAATTTTCAGAATTTGTTGTAATGTAGGCTCTTTTTCCTATCTGTGCTTCCTAAATTTTGCGTGCTTATTTTCTGTATATTTTACAACTGGAGCTACAACAACAAAGTTATCAATCCCAC
Coding sequences of Glyma12g06120
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g06120.1 sequence type=CDS gene model=Glyma12g06120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGGCAACGGCGATCGAGGAAGTGCGAACCCTCTGGATTGGCGATTTACAGTACTGGGTCGACGAGTCCTACCTCTCTCAGTGCTTCGCCCACAGCGGCGAAGTGGTTTCCATCAAAATCATCCGCAACAAGCTGACGGGCCAGCCCGAGGGCTACGGCTTCGTCGAGTTCGTCTCGCACGCCTCGGCCGAAGCCTTTCTCCGAACCTTCAACGGGGCCCAAATGCCCGGCACGGACCAGACCTTCAGGCTCAATTGGGCCTCGTTCGGGGACTCCGGGCCCGACCACTCCATCTTCGTCGGCGATCTCGCCCCCGACGTCACCGATTTCATCCTCCAGGAGACTTTCCGGGCCCATTATCCCTCCGTTAAAGGGTCCAAAGTCGTCACCGACCCCGCCACGGGCCGCTCCAAGGGCTATGGGTTTGTTAAGTTCGCCGATGAGGCCCAGAGGAACCGCGCCATGACTGAAATGAACGGCGTTTATTGCTCCACGCGCCCAATGCGTATCAGCGCGGCTACTCCTAAGAAGAATGCTTCTTTTCAACACCAATATGCTCCACCTAAAGCAATGTATCAATTTCCTGCATACACTGCTCCAGTGAGTACTGTTGCGCCGGAGAATGATGTGAATAATACCACTGTTTGTATTGGTAATTTGGATCTTAATGTGACGGAGGAGGAGCTTAAGCAAGCCTTTGTGCAATTTGGTGATATTGTGTTGGTCAAAATTTATGCGGGCAAAGGATATGGTTATGTTCAATTTGGAACTAGAGCGTCTGCTGAAGATGCCATTCAGAGGATGCAAGGGAAGGTAATAGGTCAGCAAGTGATCCAAATTTCTTGGGGCAGTACCTTGACAGCTAGACAGGATGTACCCGGTGGCTGGGGTGCACAGATGGATCCAAGTCAATGGAGTGCTTACTACGGATATGGACAGGGTTATGAATCATATGCTTATGGTGCTACTCATGATCCCTCCTTGTATGCTTATGGTGCATATGCCGGTTATGCACAATACCCTCAGAATGTTGAAGGTGCTCAAGACATGTCAGCAGTGTCTATGCCTATGGAGGAATTGTATGACCCCCTGGCAATGCCTGATGTCGATAAATTAAATGCTGCATATCTTTCAATACACGGAAGTTCCATTTTAGGGCGGTCCCTTTGGCAGAGAACTTCACAATCTTTACAGCAAGCCTAG
>Glyma12g06120.3 sequence type=CDS gene model=Glyma12g06120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGGCAACGGCGATCGAGGAAGTGCGAACCCTCTGGATTGGCGATTTACAGTACTGGGTCGACGAGTCCTACCTCTCTCAGTGCTTCGCCCACAGCGGCGAAGTGGTTTCCATCAAAATCATCCGCAACAAGCTGACGGGCCAGCCCGAGGGCTACGGCTTCGTCGAGTTCGTCTCGCACGCCTCGGCCGAAGCCTTTCTCCGAACCTTCAACGGGGCCCAAATGCCCGGCACGGACCAGACCTTCAGGCTCAATTGGGCCTCGTTCGGGGACTCCGGGCCCGACCACTCCATCTTCGTCGGCGATCTCGCCCCCGACGTCACCGATTTCATCCTCCAGGAGACTTTCCGGGCCCATTATCCCTCCGTTAAAGGGTCCAAAGTCGTCACCGACCCCGCCACGGGCCGCTCCAAGGGCTATGGGTTTGTTAAGTTCGCCGATGAGGCCCAGAGGAACCGCGCCATGACTGAAATGAACGGCGTTTATTGCTCCACGCGCCCAATGCGTATCAGCGCGGCTACTCCTAAGAAGAATGCTTCTTTTCAACACCAATATGCTCCACCTAAAGCAATGTATCAATTTCCTGCATACACTGCTCCAGTGAGTACTGTTGCGCCGGAGAATGATGTGAATAATACCACTGTTTGTATTGGTAATTTGGATCTTAATGTGACGGAGGAGGAGCTTAAGCAAGCCTTTGTGCAATTTGGTGATATTGTGTTGGTCAAAATTTATGCGGGCAAAGGATATGGTTATGTTCAATTTGGAACTAGAGCGTCTGCTGAAGATGCCATTCAGAGGATGCAAGGGAAGGTAATAGGTCAGCAAGTGATCCAAATTTCTTGGGGCAGTACCTTGACAGCTAGACAGGATGTACCCGGTGGCTGGGGTGCACAGATGGATCCAAGTCAATGGAGTGCTTACTACGGATATGGACAGGGTTATGAATCATATGCTTATGGTGCTACTCATGATCCCTCCTTGTATGCTTATGGTGCATATGCCGGTTATGCACAATACCCTCAGAATGTAAGTTTACATACACATGGAAGAGAATGA
Predicted protein sequences of Glyma12g06120
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g06120.1 sequence type=predicted peptide gene model=Glyma12g06120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVATAIEEVRTLWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAFLRTFNGAQMPGTDQTFRLNWASFGDSGPDHSIFVGDLAPDVTDFILQETFRAHYPSVKGSKVVTDPATGRSKGYGFVKFADEAQRNRAMTEMNGVYCSTRPMRISAATPKKNASFQHQYAPPKAMYQFPAYTAPVSTVAPENDVNNTTVCIGNLDLNVTEEELKQAFVQFGDIVLVKIYAGKGYGYVQFGTRASAEDAIQRMQGKVIGQQVIQISWGSTLTARQDVPGGWGAQMDPSQWSAYYGYGQGYESYAYGATHDPSLYAYGAYAGYAQYPQNVEGAQDMSAVSMPMEELYDPLAMPDVDKLNAAYLSIHGSSILGRSLWQRTSQSLQQA*
>Glyma12g06120.3 sequence type=predicted peptide gene model=Glyma12g06120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVATAIEEVRTLWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAFLRTFNGAQMPGTDQTFRLNWASFGDSGPDHSIFVGDLAPDVTDFILQETFRAHYPSVKGSKVVTDPATGRSKGYGFVKFADEAQRNRAMTEMNGVYCSTRPMRISAATPKKNASFQHQYAPPKAMYQFPAYTAPVSTVAPENDVNNTTVCIGNLDLNVTEEELKQAFVQFGDIVLVKIYAGKGYGYVQFGTRASAEDAIQRMQGKVIGQQVIQISWGSTLTARQDVPGGWGAQMDPSQWSAYYGYGQGYESYAYGATHDPSLYAYGAYAGYAQYPQNVSLHTHGRE*