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Report for Sequence Feature Glyma12g29330

Feature Type:gene_model
Chromosome:Gm12
Start:32748854
stop:32756749
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g29330
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G61560AT Annotation by Michelle Graham. TAIR10: Seven transmembrane MLO family protein | chr1:22708875-22712032 REVERSE LENGTH=583 SoyBaseE_val: 0ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0008219GO-bp Annotation by Michelle Graham. GO Biological Process: cell death SoyBaseN/AISS
GO:0009817GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction SoyBaseN/AISS
GO:0052542GO-bp Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0005516GO-mf Annotation by Michelle Graham. GO Molecular Function: calmodulin binding SoyBaseN/AISS
PF03094PFAM Mlo family JGI ISS
UniRef100_I1LTG8UniRef Annotation by Michelle Graham. Most informative UniRef hit: MLO-like protein n=1 Tax=Glycine max RepID=I1LTG8_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI000233C29FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C29F related cluster n=1 Tax=unknown RepID=UPI000233C29F SoyBaseE_val: 0ISS

Expression Patterns of Glyma12g29330
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g29330 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g171300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g29330
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g29330
>Glyma12g29330.1   sequence type=CDS   gene model=Glyma12g29330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGAAAAACCTTACAGGAAACACCTACATGGGCTGTGGCCGTTGTTTGCTTCGTTTTGCTCTCCATATCTATCTTGATCGAGCACATCCTGCATCTCATTGGAAAGTGGTTGAAGAAGAAGCACAAGAGAGCTCTATGCGAGGCACTCGAAAAGATCAAATCAGAGCTTATGCTATTGGGGTTCATATCGTTGCTCCTAACGGTAGGACAAGGTCTAATATCGAGGATATGTATATCAGAAAAGGTTGCGGGGACATTTCACCCCTGTCCAAAAAAATACTATAAGAAGAAGGAAGAGTCAGAGCACCGAACCAATAATGGTCGGAGATTACTAGCGGCTTTTCTCGATTCCGATAACCAAAATCACCGTCGTATTTTGGCGGCGGGAGGTGGTGACAACTGTCCCCCGGGTAAAGTCCCGTTTGTCTCATCCGAGGGTATTCATCAACTCCATATATTTATCTTCGTGCTGGCTGTCTTTCATGTCCTTTACTGCATACTCACTCTAGCTCTGGGTAGAGCAAAGATGAGAAGGTGGAAACGATGGGAAGAGGAAACCAAGACAGCACAGTACCAATTTTCACACGATCCTGAACGATTTAGATTTGCGAGAGAAACATCATTTGGGAGAAGACACCTGAGTTTCTGGGCCCAAAATCCTGTCCTCCTCTGGATTGTTTGTTTCTTCAGGCAGTTTGTACGGTCAGTTCCTAAAGTGGATTACTTGACACTGAGGCATGGATTTATGATGGCACATTTGGGGCCTCATAGTCACCCGAAATTCGACTTTCGGCAATATATCAAAAGATCTTTGGAAGAGGACTTCAAAGTGGTCGTTGAAATCAGTACTCCAATCTGGTTCATCACAGTGCTTTTTCTCCTGGTTCACACGGATGGCTGGTACTCTTATTATTGGCTACCATTTGCTCCTTTGATCATTGTTCTATTAGTTGGAGCCAAGTTGCAAGTGATAATAACAAAGATGGGTCAAAGAATTCAACAACGAGGAGAGGTTGTAAAGGGAGTGCCACTGGTGCAACCTGGGGATGACCTTTTCTGGTTTAACAAACCTCGACTTACTCTCTACCTCATTAATTTCGTGCTCTTTCAGAATGCTTTTCAGCTTGCCTACTTTTCATGGACTGCGCTTCAATTTGGGATAAAATCCTGTTTCCATTCCCAAACGGAGGATGCGGTGATCAAAGTCACAATGGGGGTCCTCGTTCAATTCCTTTGCAGCTACGTAACTCTTCCTCTCTATGCTCTCGTGACACAGATGGGTTCAACAATGAAACCAACCATATTCAATGAAAGAGTAGCCAGAGCTCTAAGGAATTGGCACCACACAGCGAAGAAGCATGTAAAACAAAATCGTGGATTGCAATTGCAAACCCCTTCATCTGCACCCTCAACCCCAAATCAACCTAAGTCTCAGGCCAATCTCCTACGCCAGTGCCATAGTGAAATGTACACCTATCCCACTTCTCCAATAAGATTTGACTCAGAGGCCCATCATCCCTATGAGATTGACTCACCCCCATCCTCCATCTCACATCACCATAAGTCCAAGGTCAATGCTTCTTCTTCTAGTTCTATTCATCACCATGAAATAGAAATGGGTCACCTAGATCATGATCCGCCACAAAATATCAATGAGCCCAACTCAACCCTTGTGAGTTCAGGTTCGAATCAACACGAGATTGATATTGAACACAAGAAAGAATTTTCTTTTGAGAAAAGATGA
Predicted protein sequences of Glyma12g29330
>Glyma12g29330.1   sequence type=predicted peptide   gene model=Glyma12g29330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGKTLQETPTWAVAVVCFVLLSISILIEHILHLIGKWLKKKHKRALCEALEKIKSELMLLGFISLLLTVGQGLISRICISEKVAGTFHPCPKKYYKKKEESEHRTNNGRRLLAAFLDSDNQNHRRILAAGGGDNCPPGKVPFVSSEGIHQLHIFIFVLAVFHVLYCILTLALGRAKMRRWKRWEEETKTAQYQFSHDPERFRFARETSFGRRHLSFWAQNPVLLWIVCFFRQFVRSVPKVDYLTLRHGFMMAHLGPHSHPKFDFRQYIKRSLEEDFKVVVEISTPIWFITVLFLLVHTDGWYSYYWLPFAPLIIVLLVGAKLQVIITKMGQRIQQRGEVVKGVPLVQPGDDLFWFNKPRLTLYLINFVLFQNAFQLAYFSWTALQFGIKSCFHSQTEDAVIKVTMGVLVQFLCSYVTLPLYALVTQMGSTMKPTIFNERVARALRNWHHTAKKHVKQNRGLQLQTPSSAPSTPNQPKSQANLLRQCHSEMYTYPTSPIRFDSEAHHPYEIDSPPSSISHHHKSKVNASSSSSIHHHEIEMGHLDHDPPQNINEPNSTLVSSGSNQHEIDIEHKKEFSFEKR*






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