Report for Sequence Feature Glyma13g09260
Feature Type: gene_model
Chromosome: Gm13
Start: 10392332
stop: 10399688
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g09260
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G43890 AT
Annotation by Michelle Graham. TAIR10: RAB GTPASE HOMOLOG B18 | chr1:16646934-16648395 FORWARD LENGTH=212
SoyBase E_val: 3.00E-130 ISS
GO:0007264 GO-bp
Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction
SoyBase N/A ISS
GO:0015031 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein transport
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0005525 GO-mf
Annotation by Michelle Graham. GO Molecular Function: GTP binding
SoyBase N/A ISS
KOG0080
KOG
GTPase Rab18, small G protein superfamily
JGI ISS
PTHR24073 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24073:SF482 Panther
JGI ISS
PF00071 PFAM
Ras family
JGI ISS
UniRef100_B9S2N7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9S2N7_RICCO
SoyBase E_val: 3.00E-129 ISS
UniRef100_I1LXB2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXB2_SOYBN
SoyBase E_val: 2.00E-155 ISS
Expression Patterns of Glyma13g09260
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g09260
Paralog Evidence Comments
Glyma14g26690 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g09260 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g036800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g09260
Coding sequences of Glyma13g09260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g09260.1 sequence type=CDS gene model=Glyma13g09260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATGCTTCTTCTTCCTCGTCGTCGACTCAACCCGAATTCGATTACTTGTTCAAGCTTCTCTTGATTGGGGATTCTGGCGTTGGCAAAAGCACCCTGCTTTTGAGTTTTACCTCTGATACTTTCGAGGATCTTTCTCCCACCATCGGTGTAGATTTCAAAGTTAAATATGTTACAATGGGAGGGAAAAAGTTGAAACTTGCTATTTGGGACACTGCCGGACAGGAAAGGTTTAGAACACTTACTAGTTCATATTACAGAGGAGCTCAAGGAATAATTATGGTATATGATGTAACGCGGCGGGAAACCTTTACAAATCTATCTGATATATGGGCTAAAGAAATTGACTTATACTCAACAAATCAAGACTGCATCAAGATGCTTGTAGGAAACAAAGTTGATAAGGAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGAATAGACTTTGCTAGGGAATATGGATGTCTGTATACTGAATGCAGTGCAAAAACCAGAGTCAATGTTGCACAGTGTTTTGATGAGCTTGTGATGAAGATTTTGGAGACACCAAGCCTCTTGGCTGAGGGCTCGTCCGGTGTGAAAAAAAACATCTTCAAGCAGAAACCCCCACAGTCTGATGCATCAAGTAGTGGCTGCTGCTCATGGTGA
Predicted protein sequences of Glyma13g09260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g09260.1 sequence type=predicted peptide gene model=Glyma13g09260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDASSSSSSTQPEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEDLSPTIGVDFKVKYVTMGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERVVSKKEGIDFAREYGCLYTECSAKTRVNVAQCFDELVMKILETPSLLAEGSSGVKKNIFKQKPPQSDASSSGCCSW*
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