Report for Sequence Feature Glyma14g39190
Feature Type: gene_model
Chromosome: Gm14
Start: 48307505
stop: 48309299
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma14g39190
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G03270 AT
Annotation by Michelle Graham. TAIR10: Adenine nucleotide alpha hydrolases-like superfamily protein | chr3:762136-763075 REVERSE LENGTH=159
SoyBase E_val: 2.00E-77 ISS
GO:0002238 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to molecule of fungal origin
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
PF00582 PFAM
Universal stress protein family
JGI ISS
UniRef100_D7L0F0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Universal stress protein family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L0F0_ARALL
SoyBase E_val: 1.00E-75 ISS
UniRef100_I1MBS4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MBS4_SOYBN
SoyBase E_val: 7.00E-118 ISS
Expression Patterns of Glyma14g39190
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma14g39190
Paralog Evidence Comments
Glyma02g40863 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma14g39190 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.14g211300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma14g39190
Coding sequences of Glyma14g39190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma14g39190.1 sequence type=CDS gene model=Glyma14g39190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAAAGGCACGAACTGTTGGAGTAGCCGTGGACTTTTCTCCTACCAGCAAATTAGCCCTTCGTTGGGCCGTTGATAATCTCATCAACAAAGGTGATCAAATCATCTTGATCACTGTTCAGCCTCCCCAAGCTCATCACACCCGAAAGGAGCTTTTTGAGGACACTGGTTCACCTTTGGTTCCTCTGGAGGAATTGAGGGAGTTGAATTTTACTAAGCAATATGGGATTGCTAGGGATCCTGAGGTCATAGGTATCCTTGACACTGCCTCCAAGACTAAAGGGGCAAAGGCAGTGGCAAAGGTGTACTGGGGAGATCCAAGGGAGAAGTTGTGTAATGCTGTGGAAGATCTTCACCTGGACTCTTTGGTTGTTGGAAGCAGGGGTTTAGGTCCCATTAAAAGGGTGTTGTTGGGCAGTGTAAGCAAGCATGTGATGACAAATGCTTCTTGCCCCGTCACAGTGGTTAAGGGAAAACAATCTTCCAATTCCCGTCATTAA
Predicted protein sequences of Glyma14g39190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma14g39190.1 sequence type=predicted peptide gene model=Glyma14g39190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAKARTVGVAVDFSPTSKLALRWAVDNLINKGDQIILITVQPPQAHHTRKELFEDTGSPLVPLEELRELNFTKQYGIARDPEVIGILDTASKTKGAKAVAKVYWGDPREKLCNAVEDLHLDSLVVGSRGLGPIKRVLLGSVSKHVMTNASCPVTVVKGKQSSNSRH*