Report for Sequence Feature Glyma15g03850
Feature Type: gene_model
Chromosome: Gm15
Start: 2693729
stop: 2696276
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g03850
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G21200 AT
Annotation by Michelle Graham. TAIR10: sequence-specific DNA binding transcription factors | chr1:7421483-7422814 FORWARD LENGTH=443
SoyBase E_val: 6.00E-93 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
KOG4282
KOG
Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain
JGI ISS
UniRef100_B9RIA5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RIA5_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI000233B772 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233B772 related cluster n=1 Tax=unknown RepID=UPI000233B772
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g03850
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g03850
Paralog Evidence Comments
Glyma13g41550 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g03850 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g033800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g03850
Coding sequences of Glyma15g03850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g03850.1 sequence type=CDS gene model=Glyma15g03850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACAGTTCGGGTTTGGGTGGTGGTTTTTTGTCTGGTCCCAGCGGGGAGATTTTGGACTTGGAATCTCCATTTCATAGACACCAGCACACCCAATTGGGTCATCCATCAATAACTGGTCAACAGCACATGAATATGATGAGTGGTCTTGAAAGTGATCACCCCATTGGCCTAATTGAAGTGAAAAGTTTGAATGCGGCATTGAATTTTGGTAAAGGAAAGGCGGTCGCTCCTTCCAATAGTAATGAGTTGAGTGAAGAAGATGAGCCTAGCTATGCAGAAGAAGGGAATTGTGAGAACCTGGATGGTGGGAAGAGCAAAAAGGGGTCACCTTGGCAGCGAATGAAGTGGACAGACAATGTGGTTAGGCTTCTGATAACAGTGGTGAGTTGTGTGGGTGATGATGGCACAATTGGTGGCATGGATTGTCATAAAAGGAAATCTGGGGTTTTACAAAAGAAGGGCAAGTGGAAAACGGTCTCCAAGATAATGATAGGCAAGGGTTGCCATGTGTCGCCGCAGCAGTGTGAGGACAAGTTCAATGACTTAAATAAGAGATACAAGAGGTTAAATGACATACTTGGAAGGGGAACTTGTTGTCAGGTGGTTGAGAATCCTGTGCTGATGGATTCAATGCCTAACCTGTCAGCTAAGATGAAGGATGACGTTAGGAAGATATTGAGCTCAAAGCACTTGTTTTATAAGGAGATGTGTGCTTACCATAATGGGCAAAGGATACCAAACTCTCATGAACTTGATTTACAGGGTTATTCTCTAGAGCATGGGAGGGACTCCAGAGATAATAATGGATCTGAGGATGAAGATGAGGATAACAATGATAGTGAGGATGATGAGTCAGATGATGAAATTAATATTAATGCACATGAGGATGGGGGGAGGATGCAGCAGCTATGTGATAGAAATAAGTTAAGTGAGGAGGATGTCCATTTTGGTCCACAAACTTCTCGGATGGATAAATTTGAGGTTGAAATGGCAAGGGTTTTTCAAGACCCCACAAAGTCATTGCATGAACAAAGAGAGTGGATTAAGATCCAGATGCTACAGCTTCAAGAGCAAAATATCAGCTACCAAGCCCAAGCTCTTGAACTTGAGAAACAACGGCTTAAGTGGTTAAGATATTGCAGCAAGAAGGACAGGGAGCTGGAGAAGCTGAGGTTGGAGAACAAAAGAATGAAATTAGAAAATGAGCGCAGGATCTTGAAACTGAAGCAGAAAGAGCTTGAGGCAGATTTCAGTACATCTGAGATGTCTTTAGACCCTGCCTCTCTTGGAATCAACCGGCCACAAGGGAGGGAACATATCAGCTTAGGCAGACAACAATAG
Predicted protein sequences of Glyma15g03850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g03850.1 sequence type=predicted peptide gene model=Glyma15g03850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNSSGLGGGFLSGPSGEILDLESPFHRHQHTQLGHPSITGQQHMNMMSGLESDHPIGLIEVKSLNAALNFGKGKAVAPSNSNELSEEDEPSYAEEGNCENLDGGKSKKGSPWQRMKWTDNVVRLLITVVSCVGDDGTIGGMDCHKRKSGVLQKKGKWKTVSKIMIGKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTCCQVVENPVLMDSMPNLSAKMKDDVRKILSSKHLFYKEMCAYHNGQRIPNSHELDLQGYSLEHGRDSRDNNGSEDEDEDNNDSEDDESDDEININAHEDGGRMQQLCDRNKLSEEDVHFGPQTSRMDKFEVEMARVFQDPTKSLHEQREWIKIQMLQLQEQNISYQAQALELEKQRLKWLRYCSKKDRELEKLRLENKRMKLENERRILKLKQKELEADFSTSEMSLDPASLGINRPQGREHISLGRQQ*