Glyma15g12190 - SoyBase

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Report for Sequence Feature Glyma15g12190

Feature Type:	gene_model
Chromosome:	Gm15
Start:	9011672
stop:	9014646
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g12190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G12560	AT	Annotation by Michelle Graham. TAIR10: F-box and associated interaction domains-containing protein \| chr4:7441815-7443157 FORWARD LENGTH=413	SoyBase	E_val: 1.00E-70	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0042177	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of protein catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR10775	Panther	AC-LIKE TRANSPOSASE-RELATED	JGI		ISS
PTHR10775:SF7	Panther	TRANSPOSASE-LIKE PROTEIN	JGI		ISS
PF00646	PFAM	F-box domain	JGI		ISS
PF07734	PFAM	F-box associated	JGI		ISS
UniRef100_G7IM37	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box protein n=1 Tax=Medicago truncatula RepID=G7IM37_MEDTR	SoyBase	E_val: 2.00E-165	ISS
UniRef100_I1MFN9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFN9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g12190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g12190

Paralog	Evidence	Comments
Glyma09g01330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g12190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g115100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g12190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g12190

Limit To All Plant Sequences

>Glyma15g12190.4   sequence type=transcript   gene model=Glyma15g12190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCCAAATGAGAAAATTCATGGTATTTATGATTTTACATTACATTTTATATACCGAGTGAGGACGCTAGTAGTAGAGCACTGAATTGGATATGTGTCTATCACCTAATCTAAGTCATCGTGTGGTGGTGGTTTTGGTCGGTGGCAAAGAGAGAAGAAACAAAGCCTGTTCTTCTTACCATGTCGGATCATCTTCCGCGCGAAGTGCTAACCGAAATCCTCTCCCGGTTACCGGTCAGATCCCTACTGAGATTCCGGTCAACGTCCAAGTCATGGAAGTCCTTAATCGACAGCCAGCACTTGAACTGGCTTCATCTGACTAGATCCCTGACCTTAACCTCCAACACGAGCCTCATCCTCCGTGTGGACTCCGATCTATACCAGACCAATTTCCCAACCCTAGACCCTCCCGTATCCCTTAACCACCCTCTCATGTGCTACAGCAACAGCATAACCCTCCTCGGTTCCTGCAACGGCCTTCTCTGTATATCCAACGTCGCCGACGACATCGCCTTTTGGAACCCCTCCCTCCGCCAACACCGTATTCTTCCTTACCTCCCTGTCCCCCGCCGCCGTCACCCCGACACGACGCTCTTTGCCGCCCGCGTCTGCGGCTTCGGCTTCGACCATAAAACTCGCGACTACAAGCTCGTCCGCATCTCTTATTTCGTCGACCTTCATGACCGCTCCTTCGACTCCCAGGTCAAGCTCTACACGCTCCGCGCCAACGCCTGGAAGACACTTCCCAGCTTGCCCTACGCGCTCTGCTGCGCCCGTACCATGGGCGTCTTCGTCGGAAACTCCCTCCACTGGGTCGTCACGCGCAAACTCGAACCCGACCAACCCGATCTCATCATCGCCTTCGATCTCACCCACGACATCTTCCGCGAGCTCCCGCTTCCTGACACCGGAGGTGTCGACGGCGGGTTCGAGATCGACCTGGCGCTGTTAGGTGGTTCCCTCTGCATGACCGTGAACTTTCACAAAACGAGAATCGACGTTTGGGTGATGAGGGAGTATAACCGTAGAGACAGTTGGTGTAAGGTGTTCACGCTCGAGGAGTCGCGTGAGATGAGATCGTTGAAATGCGTGAGGCCGTTGGGCTACTCGAGCGATGGGAACAAGGTTCTGTTGGAACACGACAGGAAGAGGCTGTTTTGGTATGACCTGGAAAAGAAAGAGGTTGCCCTTGTTAAAATTCAGGGTTTGCCTAATTTAAATGAAGCCATGATTTGTTTGGGAACCCTCGTACCACCATACTTCTTACCTCGTCAAATTTGTAGGAAGCCGCGTGCTTTAGGATGCGAACGTCCCAGGAAGACGAGGGATGACTTCCTGTCGCAGGGTTTCAAATTGACATTATGAGGAAGTCTAAGAAGAAGAAGCAATGGTACATGGGGGTAGCTGAAACTGGCTCGGCGGGTTTGTTTTGCAGTTGATTCAAGCCAAAGGGAGGTTGAGGAAAAGTAAGAAAATGTTGCTTCCGTTACAATGACTGTAATGTATAGTTAAATTAATACTATCAGCTACATATTTTACTTTGGGATGTGTGCCACATTTGACGAACTCTGAAACAAACATGCTCTTATTGGTTACTTGCTGAGTTATCTGACTCTGATGATGAAATTCGTGGCCCTGGTTCACAGGACGAGTTAAATTGATCAAGAGCAGGAACAGAGACACCGTTTTGCCTGTTAAGATATAAGACTCTTTCCTTGTACAGTTTTTGCACCTTTTGTTTTCTTAGCGATTTAGGGGCGAACAAAGCCCCCCACCAAAGTGAAAGAAAGGGCTGCAGACCTGCCATTCAGAATGTTGAAGAAGGAAACAATGACTGAAGAACAGATACCAAATATACAAATGCTGCTTTCCTCACTTATTAACAGTCTCCAATTACTAAGATCCCGTAAGACACTCGCTTTCCGCAATAGAAAAAAAATGGCCTATATGGTTTTGTCTAAGCTTGGATTGCCTCAGTGGTTTGGTTGTAAAGAAGTGTCATGTATGTACGTGTGTTAATCTGGTTGTACCAGCAAACTGTAATTAAATTTTTGCAGTTAACTTGACATGAAATATTGTTGTTTTTGTTTATTGGTAGGTGGACTTTGCAAATTGAATGCGGAAAGGTTGACAATTTACATTAACGAAGGATTTGACACTAGGCTTTTTGTCCTTTAGATGAAACTAAGTTGAAGTGCTTTCTAGTGCTGGCCTTGTCCTTCGATACTTGTGGTTTTAGGATGTTAATCTTTTGTTGCTTAAATGAATTTAACTAACGCTTATTTAGCGCTTGTGTGTATACTTTCACAATATGTTCAATACGATTTTTCGTAAATTTTGGTCATCTGACATGGAGAGA

Coding sequences of Glyma15g12190

Limit To All Plant Sequences

>Glyma15g12190.3   sequence type=CDS   gene model=Glyma15g12190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGATCATCTTCCGCGCGAAGTGCTAACCGAAATCCTCTCCCGGTTACCGGTCAGATCCCTACTGAGATTCCGGTCAACGTCCAAGTCATGGAAGTCCTTAATCGACAGCCAGCACTTGAACTGGCTTCATCTGACTAGATCCCTGACCTTAACCTCCAACACGAGCCTCATCCTCCGTGTGGACTCCGATCTATACCAGACCAATTTCCCAACCCTAGACCCTCCCGTATCCCTTAACCACCCTCTCATGTGCTACAGCAACAGCATAACCCTCCTCGGTTCCTGCAACGGCCTTCTCTGTATATCCAACGTCGCCGACGACATCGCCTTTTGGAACCCCTCCCTCCGCCAACACCGTATTCTTCCTTACCTCCCTGTCCCCCGCCGCCGTCACCCCGACACGACGCTCTTTGCCGCCCGCGTCTGCGGCTTCGGCTTCGACCATAAAACTCGCGACTACAAGCTCGTCCGCATCTCTTATTTCGTCGACCTTCATGACCGCTCCTTCGACTCCCAGGTCAAGCTCTACACGCTCCGCGCCAACGCCTGGAAGACACTTCCCAGCTTGCCCTACGCGCTCTGCTGCGCCCGTACCATGGGCGTCTTCGTCGGAAACTCCCTCCACTGGGTCGTCACGCGCAAACTCGAACCCGACCAACCCGATCTCATCATCGCCTTCGATCTCACCCACGACATCTTCCGCGAGCTCCCGCTTCCTGACACCGGAGGTGTCGACGGCGGGTTCGAGATCGACCTGGCGCTGTTAGGTGGTTCCCTCTGCATGACCGTGAACTTTCACAAAACGAGAATCGACGTTTGGGTGATGAGGGAGTATAACCGTAGAGACAGTTGGTGTAAGGTGTTCACGCTCGAGGAGTCGCGTGAGATGAGATCGTTGAAATGCGTGAGGCCGTTGGGCTACTCGAGCGATGGGAACAAGGTTCTGTTGGAACACGACAGGAAGAGGCTGTTTTGGTATGACCTGGAAAAGAAAGAGGTTGCCCTTGTTAAAATTCAGGGTTTGCCTAATTTAAATGAAGCCATGATTTGTTTGGGAACCCTCGTACCACCATACTTCTTACCTCGTCAAATTTGTAGGAAGCCGCGTGCTTTAGGATGCGAACGTCCCAGGAAGACGAGGGATGACTTCCTGTCGCAGGGTTTCAAATTGACATTATGA

>Glyma15g12190.4   sequence type=CDS   gene model=Glyma15g12190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGATCATCTTCCGCGCGAAGTGCTAACCGAAATCCTCTCCCGGTTACCGGTCAGATCCCTACTGAGATTCCGGTCAACGTCCAAGTCATGGAAGTCCTTAATCGACAGCCAGCACTTGAACTGGCTTCATCTGACTAGATCCCTGACCTTAACCTCCAACACGAGCCTCATCCTCCGTGTGGACTCCGATCTATACCAGACCAATTTCCCAACCCTAGACCCTCCCGTATCCCTTAACCACCCTCTCATGTGCTACAGCAACAGCATAACCCTCCTCGGTTCCTGCAACGGCCTTCTCTGTATATCCAACGTCGCCGACGACATCGCCTTTTGGAACCCCTCCCTCCGCCAACACCGTATTCTTCCTTACCTCCCTGTCCCCCGCCGCCGTCACCCCGACACGACGCTCTTTGCCGCCCGCGTCTGCGGCTTCGGCTTCGACCATAAAACTCGCGACTACAAGCTCGTCCGCATCTCTTATTTCGTCGACCTTCATGACCGCTCCTTCGACTCCCAGGTCAAGCTCTACACGCTCCGCGCCAACGCCTGGAAGACACTTCCCAGCTTGCCCTACGCGCTCTGCTGCGCCCGTACCATGGGCGTCTTCGTCGGAAACTCCCTCCACTGGGTCGTCACGCGCAAACTCGAACCCGACCAACCCGATCTCATCATCGCCTTCGATCTCACCCACGACATCTTCCGCGAGCTCCCGCTTCCTGACACCGGAGGTGTCGACGGCGGGTTCGAGATCGACCTGGCGCTGTTAGGTGGTTCCCTCTGCATGACCGTGAACTTTCACAAAACGAGAATCGACGTTTGGGTGATGAGGGAGTATAACCGTAGAGACAGTTGGTGTAAGGTGTTCACGCTCGAGGAGTCGCGTGAGATGAGATCGTTGAAATGCGTGAGGCCGTTGGGCTACTCGAGCGATGGGAACAAGGTTCTGTTGGAACACGACAGGAAGAGGCTGTTTTGGTATGACCTGGAAAAGAAAGAGGTTGCCCTTGTTAAAATTCAGGGTTTGCCTAATTTAAATGAAGCCATGATTTGTTTGGGAACCCTCGTACCACCATACTTCTTACCTCGTCAAATTTGTAGGAAGCCGCGTGCTTTAGGATGCGAACGTCCCAGGAAGACGAGGGATGACTTCCTGTCGCAGGGTTTCAAATTGACATTATGA

Predicted protein sequences of Glyma15g12190

Limit To All Plant Sequences

>Glyma15g12190.3   sequence type=predicted peptide   gene model=Glyma15g12190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDHLPREVLTEILSRLPVRSLLRFRSTSKSWKSLIDSQHLNWLHLTRSLTLTSNTSLILRVDSDLYQTNFPTLDPPVSLNHPLMCYSNSITLLGSCNGLLCISNVADDIAFWNPSLRQHRILPYLPVPRRRHPDTTLFAARVCGFGFDHKTRDYKLVRISYFVDLHDRSFDSQVKLYTLRANAWKTLPSLPYALCCARTMGVFVGNSLHWVVTRKLEPDQPDLIIAFDLTHDIFRELPLPDTGGVDGGFEIDLALLGGSLCMTVNFHKTRIDVWVMREYNRRDSWCKVFTLEESREMRSLKCVRPLGYSSDGNKVLLEHDRKRLFWYDLEKKEVALVKIQGLPNLNEAMICLGTLVPPYFLPRQICRKPRALGCERPRKTRDDFLSQGFKLTL*

>Glyma15g12190.4   sequence type=predicted peptide   gene model=Glyma15g12190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDHLPREVLTEILSRLPVRSLLRFRSTSKSWKSLIDSQHLNWLHLTRSLTLTSNTSLILRVDSDLYQTNFPTLDPPVSLNHPLMCYSNSITLLGSCNGLLCISNVADDIAFWNPSLRQHRILPYLPVPRRRHPDTTLFAARVCGFGFDHKTRDYKLVRISYFVDLHDRSFDSQVKLYTLRANAWKTLPSLPYALCCARTMGVFVGNSLHWVVTRKLEPDQPDLIIAFDLTHDIFRELPLPDTGGVDGGFEIDLALLGGSLCMTVNFHKTRIDVWVMREYNRRDSWCKVFTLEESREMRSLKCVRPLGYSSDGNKVLLEHDRKRLFWYDLEKKEVALVKIQGLPNLNEAMICLGTLVPPYFLPRQICRKPRALGCERPRKTRDDFLSQGFKLTL*

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