Glyma15g13680 - SoyBase

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Report for Sequence Feature Glyma15g13680

Feature Type:	gene_model
Chromosome:	Gm15
Start:	10292467
stop:	10300099
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g13680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G05390	AT	Annotation by Michelle Graham. TAIR10: root FNR 1 \| chr4:2738839-2740483 REVERSE LENGTH=378	SoyBase	E_val: 0	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0042651	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid membrane	SoyBase	N/A	ISS
GO:0004324	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ferredoxin-NADP+ reductase activity	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
GO:0050661	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NADP binding	SoyBase	N/A	ISS
KOG0534	KOG	NADH-cytochrome b-5 reductase	JGI		ISS
PTHR19384	Panther	NADPH FLAVIN OXIDOREDUCTASE	JGI		ISS
PTHR19384:SF1	Panther	FERREDOXIN--NADP REDUCTASE	JGI		ISS
PF00175	PFAM	Oxidoreductase NAD-binding domain	JGI		ISS
PF00970	PFAM	Oxidoreductase FAD-binding domain	JGI		ISS
UniRef100_C6TIM5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TIM5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q41014	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ferredoxin--NADP reductase, root isozyme, chloroplastic n=1 Tax=Pisum sativum RepID=FENR2_PEA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g13680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g13680

Paralog	Evidence	Comments
Glyma09g02800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g13680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g130100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g13680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g13680

Limit To All Plant Sequences

>Glyma15g13680.1   sequence type=CDS   gene model=Glyma15g13680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCATTTGGCCCTGTCTCAGATGGCTGTAACTGTTCCTGTTGGCAACGATTTGTCTCTCAGAAGATCTGCAGTTAAGGCCCCTAACTTGAACTTTTGGGATAAATCATGGGCACCAGTATTTACTTTGGACTTGAAGCCAAACAACCCAAGTTTAAGAAGTCGTCATGTGGTATGCATGTCCGTGCAACAAGCAAGTGTATCCAAAGTTAATGTCTCACCTTTAGAATTGGAAGATGCTAAAGAACCTCCATTGAACTTATACAAGCCTAAAGAACCCTATACAGCAACAATTGTTTCTGTTGATAGGCTAGTGGGGCCAAAGGCTCCTGGGGAAACTTGTCATATTGTGATTGATCACGGTGGAAATGTTCCCTACTGGGAAGGACAGAGTTATGGTGTTATTCCACCAGGTGAAAATCCTAAGAAACCTGGGGCTCCTCATAATGTTCGACTATATTCAATTGCTTCCACAAGGTATGGGGACTTTTTTGATGGAAAAACTGCCAGCTTGTGTGTGCGTCGTGCTGTTTATTATGATCCTGAGACAGGAAAGGAAGATCCTTCCAAGAATGGCATTTGTAGCAATTTTTTGTGTAACTCAAAGCCAGGAGACAAAATTCAGATCACAGGCCCGTCGGGGAAGATAATGCTTTTGCCCGAGGATGACCCAAATGCTACCCATATAATGATTGCCACAGGCACTGGTGTTGCTCCATTCAGAGGCTATCTACGCCGAATGTTCATGGAATCAGTCCCTGCATACAAGTTTGGTGGATTAGCATGGCTTTTCCTTGGAGTTGCCAACACTGACAGTCTTCTCTATGATGATGAATTCAGCAAATACCTCAAGGATTATCCGGACAATTTCCGCTACAATCGAGCCCTCAGCAGAGAACAAAAGAACAAGAGTGGGGGCAAAATGTATGTTCAGGATAAGATTGAGGAGTACAGTGATGAAATCTTCAAACTCCTGGATAATGGGGCCCACATATATTTCTGTGGTCTGAAAGGGATGATGCCAGGGATCCAAGATACGCTGAAGAAGGTTGCTGAGCAAAGAGGAGAAAGTTGGGAAGAGAAGCTTTCTCAACTTAAGAAGAACAAACAATGGCATGTTGAAGTCTATTGA

Predicted protein sequences of Glyma15g13680

Limit To All Plant Sequences

>Glyma15g13680.1   sequence type=predicted peptide   gene model=Glyma15g13680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHLALSQMAVTVPVGNDLSLRRSAVKAPNLNFWDKSWAPVFTLDLKPNNPSLRSRHVVCMSVQQASVSKVNVSPLELEDAKEPPLNLYKPKEPYTATIVSVDRLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPHNVRLYSIASTRYGDFFDGKTASLCVRRAVYYDPETGKEDPSKNGICSNFLCNSKPGDKIQITGPSGKIMLLPEDDPNATHIMIATGTGVAPFRGYLRRMFMESVPAYKFGGLAWLFLGVANTDSLLYDDEFSKYLKDYPDNFRYNRALSREQKNKSGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLKGMMPGIQDTLKKVAEQRGESWEEKLSQLKKNKQWHVEVY*

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