Glyma15g16240 - SoyBase

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Report for Sequence Feature Glyma15g16240

Feature Type:	gene_model
Chromosome:	Gm15
Start:	12554290
stop:	12559966
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g16240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02790	AT	Annotation by Michelle Graham. TAIR10: polygalacturonase 4 \| chr1:610681-612225 REVERSE LENGTH=422	SoyBase	E_val: 4.00E-102	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004650	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity	SoyBase	N/A	ISS
PF00295	PFAM	Glycosyl hydrolases family 28	JGI		ISS
UniRef100_B9RT98	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Exopolygalacturonase clone GBGE184, putative n=1 Tax=Ricinus communis RepID=B9RT98_RICCO	SoyBase	E_val: 4.00E-118	ISS
UniRef100_UPI000233B31C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B31C related cluster n=1 Tax=unknown RepID=UPI000233B31C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g16240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g16240

Paralog	Evidence	Comments
Glyma09g04640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g16240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g151800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g16240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g16240

Limit To All Plant Sequences

>Glyma15g16240.2   sequence type=CDS   gene model=Glyma15g16240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCTACGAAGAGAATTGGTGTTCTAATTATGTTCTTTGCTCTGGCTTATTATGTGGATGCTATATCAAGAACAAAGCCAGTTGCTAGTCCTGATATCTACAAGGGTAGAAATGTAGCTAAGGATAAAATTGCTCCTGGCGAGAAGATAGTTAATGTCTTGAGTTTTGGAGCCAAACCTGATGGCAAGTTTGATTGCACTCAGGCTTTCATGGATGCATGGAGAGCAACATGCAAGTCCAATGTGCAAGCCAGGCTTCTGATCCCTCAGGGAAGATTCGTGGTTTCAACAATGTTTTTTGCAGGGCCATGTTTGACTCCAGGGCCCATAACAATCCAAGTTGTAGGCACTGTTGTGGCCACAACAGATATCAGTGAGTATGTGAATGGTGAATGGCTCATGTTTGAGGACCTGGATGGTGTAAAGCTTATTGGTGGTGGTACTTTTGATGGCATGGGTAAGGAATCATGGGCAACAACTGAGAACTGTGAAGCAGACCAAACCGACACTTGCGTCAGAAACCCTAGTAGTATTTATTTCCACAAAGTCAGGAATGGAATTATACAGAACATCAAATCCGTAAACCCCAAAGGCTTTCATTTTTTTGTCACTAACTGTGCTAACATCAGACTCCGATTACTTAAGCTCACTGCACCAGCTACCAGCCCCAACACCGATGGAATTCATATTAGCAACTCCATCGATGTTAAATTATCTAAAAATACCATTGAAACTGGAGATGATTGTGTTTCCATGATTCAAGGAGTCAACAATATTACTATCAACAAACTGAAATGTGGCCCTGGACACGGTATTAGTATTGGAAGTCTTGGAAAGTATGCGGATGAGCAAGAAGTGAAAGACATTCGCGTCAAGAACTGCACGATGGTTGGCACAACCAATGGCCTCAGAATCAAGACATGGCCAGATAAGTATCCAGGTTCAGCATCAGCTATCACCTTCAGTGACATTGTCATGGAAAATGTTAAAAATCCTATCATCATTGACCAAGAGTATGATTGCGAACCAGCAAACTGCCAAAAGAAGCCTTCACTTGTAAAGATAAAAGATGTTGTTTTTTCAAACATAAGGGGAACCACAATTTCACCAATTGCAGTGGATTTAAGGTGTAGCAAGCAGTTCCCATGCCAAGATGTTAAACTTAAGAACATAAACCTGAACCTTGGACCCAAGCCGTCGGGTTCCAGATGTACCAATATTAAACCAGTCTATGGGGGTGTTCAAAGACCAGCAGCTTGCCTATAA

Predicted protein sequences of Glyma15g16240

Limit To All Plant Sequences

>Glyma15g16240.2   sequence type=predicted peptide   gene model=Glyma15g16240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATKRIGVLIMFFALAYYVDAISRTKPVASPDIYKGRNVAKDKIAPGEKIVNVLSFGAKPDGKFDCTQAFMDAWRATCKSNVQARLLIPQGRFVVSTMFFAGPCLTPGPITIQVVGTVVATTDISEYVNGEWLMFEDLDGVKLIGGGTFDGMGKESWATTENCEADQTDTCVRNPSSIYFHKVRNGIIQNIKSVNPKGFHFFVTNCANIRLRLLKLTAPATSPNTDGIHISNSIDVKLSKNTIETGDDCVSMIQGVNNITINKLKCGPGHGISIGSLGKYADEQEVKDIRVKNCTMVGTTNGLRIKTWPDKYPGSASAITFSDIVMENVKNPIIIDQEYDCEPANCQKKPSLVKIKDVVFSNIRGTTISPIAVDLRCSKQFPCQDVKLKNINLNLGPKPSGSRCTNIKPVYGGVQRPAACL*

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